Analysis of interatomic Contacts of Structural Units in PDB entry:
5HNM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5HNM entry

There are 6 chains in PDB entry 5HNM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 88	THR 266
B	GLU 88	LYS 268
C	GLU 88	ASN 265
D	GLU 88	THR 266
E	GLN 87	THR 266
F	GLN 87	THR 266

There are 63 helices in PDB entry 5HNM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	88	92	Right-handed 310
Helix 2	AA2	A	121	135	Right-handed alpha
Helix 3	AA3	A	147	164	Right-handed alpha
Helix 4	AA4	A	168	177	Right-handed alpha
Helix 5	AA5	A	186	190	Right-handed 310
Helix 6	AA6	A	204	214	Right-handed alpha
Helix 7	AA7	A	215	219	Right-handed 310
Helix 8	AA8	A	229	234	Right-handed alpha
Helix 9	AA9	A	246	257	Right-handed alpha
Helix 10	AB1	A	259	264	Right-handed alpha
Helix 11	AB2	B	88	92	Right-handed 310
Helix 12	AB3	B	121	135	Right-handed alpha
Helix 13	AB4	B	147	165	Right-handed alpha
Helix 14	AB5	B	168	177	Right-handed alpha
Helix 15	AB6	B	186	191	Right-handed 310
Helix 16	AB7	B	204	216	Right-handed alpha
Helix 17	AB8	B	217	219	Right-handed 310
Helix 18	AB9	B	226	228	Right-handed 310
Helix 19	AC1	B	229	234	Right-handed alpha
Helix 20	AC2	B	246	257	Right-handed alpha
Helix 21	AC3	B	259	264	Right-handed alpha
Helix 22	AC4	C	88	92	Right-handed 310
Helix 23	AC5	C	121	135	Right-handed alpha
Helix 24	AC6	C	147	164	Right-handed alpha
Helix 25	AC7	C	168	177	Right-handed alpha
Helix 26	AC8	C	186	190	Right-handed 310
Helix 27	AC9	C	204	216	Right-handed alpha
Helix 28	AD1	C	217	219	Right-handed 310
Helix 29	AD2	C	226	228	Right-handed 310
Helix 30	AD3	C	229	234	Right-handed alpha
Helix 31	AD4	C	246	256	Right-handed alpha
Helix 32	AD5	C	259	265	Right-handed alpha
Helix 33	AD6	D	88	92	Right-handed 310
Helix 34	AD7	D	121	134	Right-handed alpha
Helix 35	AD8	D	147	164	Right-handed alpha
Helix 36	AD9	D	168	177	Right-handed alpha
Helix 37	AE1	D	186	190	Right-handed 310
Helix 38	AE2	D	206	216	Right-handed alpha
Helix 39	AE3	D	217	219	Right-handed 310
Helix 40	AE4	D	226	228	Right-handed 310
Helix 41	AE5	D	229	234	Right-handed alpha
Helix 42	AE6	D	246	256	Right-handed alpha
Helix 43	AE7	D	259	264	Right-handed alpha
Helix 44	AE8	E	88	92	Right-handed 310
Helix 45	AE9	E	121	134	Right-handed alpha
Helix 46	AF1	E	147	164	Right-handed alpha
Helix 47	AF2	E	168	177	Right-handed alpha
Helix 48	AF3	E	186	190	Right-handed 310
Helix 49	AF4	E	204	216	Right-handed alpha
Helix 50	AF5	E	217	219	Right-handed 310
Helix 51	AF6	E	229	234	Right-handed alpha
Helix 52	AF7	E	246	257	Right-handed alpha
Helix 53	AF8	E	259	264	Right-handed alpha
Helix 54	AF9	F	88	92	Right-handed 310
Helix 55	AG1	F	121	134	Right-handed alpha
Helix 56	AG2	F	147	164	Right-handed alpha
Helix 57	AG3	F	168	177	Right-handed alpha
Helix 58	AG4	F	186	190	Right-handed 310
Helix 59	AG5	F	204	216	Right-handed alpha
Helix 60	AG6	F	217	219	Right-handed 310
Helix 61	AG7	F	229	234	Right-handed alpha
Helix 62	AG8	F	246	257	Right-handed alpha
Helix 63	AG9	F	259	264	Right-handed alpha

There are 12 sheets in PDB entry 5HNM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	110	first strand
Strand 2	A	116	118	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	143	first strand
Strand 2	A	193	198	anti-parallel
Strand 3	A	241	244	anti-parallel
Strand 4	A	221	223	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	110	first strand
Strand 2	B	116	118	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	143	first strand
Strand 2	B	193	198	anti-parallel
Strand 3	B	241	244	anti-parallel
Strand 4	B	221	223	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	110	first strand
Strand 2	C	116	118	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	143	first strand
Strand 2	C	193	198	anti-parallel
Strand 3	C	241	244	anti-parallel
Strand 4	C	221	223	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	110	first strand
Strand 2	D	116	118	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	143	first strand
Strand 2	D	193	198	anti-parallel
Strand 3	D	241	244	anti-parallel
Strand 4	D	221	223	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	110	first strand
Strand 2	E	116	118	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	139	143	first strand
Strand 2	E	193	198	anti-parallel
Strand 3	E	241	244	anti-parallel
Strand 4	E	221	223	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	108	110	first strand
Strand 2	F	116	118	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	139	143	first strand
Strand 2	F	193	198	anti-parallel
Strand 3	F	241	244	anti-parallel
Strand 4	F	221	223	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5HNM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5HNM