Analysis of interatomic Contacts of Structural Units in PDB entry:
5HNN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HNN entry

There are 3 chains in PDB entry 5HNN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 315
B
 LEU 2ALA 315
C
 SER -1LYS 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 5HNN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 41Right-handed alpha
Helix 2
AA2
A
51 56Right-handed alpha
Helix 3
AA3
A
64 81Right-handed alpha
Helix 4
AA4
A
106 122Right-handed alpha
Helix 5
AA5
A
139 157Right-handed alpha
Helix 6
AA6
A
168 172Right-handed 310
Helix 7
AA7
A
184 190Right-handed alpha
Helix 8
AA8
A
222 239Right-handed alpha
Helix 9
AA9
A
252 269Right-handed alpha
Helix 10
AB1
A
304 315Right-handed alpha
Helix 11
AB2
B
31 41Right-handed alpha
Helix 12
AB3
B
51 56Right-handed alpha
Helix 13
AB4
B
64 81Right-handed alpha
Helix 14
AB5
B
106 122Right-handed alpha
Helix 15
AB6
B
139 157Right-handed alpha
Helix 16
AB7
B
168 172Right-handed 310
Helix 17
AB8
B
184 189Right-handed alpha
Helix 18
AB9
B
190 192Right-handed 310
Helix 19
AC1
B
222 239Right-handed alpha
Helix 20
AC2
B
252 269Right-handed alpha
Helix 21
AC3
B
304 315Right-handed alpha
Helix 22
AC4
C
31 41Right-handed alpha
Helix 23
AC5
C
51 56Right-handed alpha
Helix 24
AC6
C
64 81Right-handed alpha
Helix 25
AC7
C
106 122Right-handed alpha
Helix 26
AC8
C
139 157Right-handed alpha
Helix 27
AC9
C
168 172Right-handed 310
Helix 28
AD1
C
184 189Right-handed alpha
Helix 29
AD2
C
190 192Right-handed 310
Helix 30
AD3
C
222 239Right-handed alpha
Helix 31
AD4
C
252 269Right-handed alpha
Helix 32
AD5
C
304 315Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5HNN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 9first strand
Strand 2
A
45 50parallel
Strand 3
A
84 89parallel
Strand 4
A
127 130parallel
Strand 5
A
163 166parallel
Strand 6
A
199 206parallel
Strand 7
A
242 248parallel
Strand 8
A
273 281parallel
Strand 9
A
4 9parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
98 99anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 9first strand
Strand 2
B
45 50parallel
Strand 3
B
84 89parallel
Strand 4
B
127 130parallel
Strand 5
B
163 166parallel
Strand 6
B
199 206parallel
Strand 7
B
242 248parallel
Strand 8
B
273 281parallel
Strand 9
B
4 9parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 95first strand
Strand 2
B
98 99anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 9first strand
Strand 2
C
45 50parallel
Strand 3
C
84 89parallel
Strand 4
C
127 130parallel
Strand 5
C
163 166parallel
Strand 6
C
199 206parallel
Strand 7
C
242 248parallel
Strand 8
C
273 281parallel
Strand 9
C
4 9parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
94 95first strand
Strand 2
C
98 99anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il