Analysis of interatomic Contacts of Structural Units in PDB entry:
5HNP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HNP entry

There are 2 chains in PDB entry 5HNP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 276ILE 438
B
 GLU 275ASN 440
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 5HNP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
277 288Right-handed alpha
Helix 2
AA2
A
364 368Right-handed alpha
Helix 3
AA3
B
277 288Right-handed alpha
Helix 4
AA4
B
290 294Right-handed 310
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There are 6 sheets in PDB entry 5HNP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 298first strand
Strand 2
A
408 422anti-parallel
Strand 3
A
391 401anti-parallel
Strand 4
A
342 352anti-parallel
Strand 5
A
371 373anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 325first strand
Strand 2
A
408 422parallel
Strand 3
A
391 401anti-parallel
Strand 4
A
342 352anti-parallel
Strand 5
A
358 363anti-parallel
Strand 6
B
428 429anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 311first strand
Strand 2
A
329 338anti-parallel
Strand 3
A
376 385anti-parallel
Strand 4
B
436 437anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 429first strand
Strand 2
B
358 363anti-parallel
Strand 3
B
345 352anti-parallel
Strand 4
B
391 401anti-parallel
Strand 5
B
408 422anti-parallel
Strand 6
B
296 298anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 429first strand
Strand 2
B
358 363anti-parallel
Strand 3
B
345 352anti-parallel
Strand 4
B
391 401anti-parallel
Strand 5
B
408 422anti-parallel
Strand 6
B
323 325parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 437first strand
Strand 2
B
376 385anti-parallel
Strand 3
B
329 338anti-parallel
Strand 4
B
303 312anti-parallel
Strand 5
B
316 317anti-parallel
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