Analysis of interatomic Contacts of Structural Units in PDB entry:
5HO9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5HO9 entry

There are 2 chains in PDB entry 5HO9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 44	TYR 639
B	LYS 44	TYR 639

There are 17 helices in PDB entry 5HO9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	100	105	Right-handed alpha
Helix 2	AA2	A	105	110	Right-handed alpha
Helix 3	AA3	A	199	203	Right-handed 310
Helix 4	AA4	A	204	211	Right-handed alpha
Helix 5	AA5	A	218	222	Right-handed 310
Helix 6	AA6	A	453	458	Right-handed alpha
Helix 7	AA7	A	551	563	Right-handed alpha
Helix 8	AA8	A	581	585	Right-handed 310
Helix 9	AA9	B	100	105	Right-handed alpha
Helix 10	AB1	B	105	110	Right-handed alpha
Helix 11	AB2	B	116	120	Right-handed 310
Helix 12	AB3	B	199	203	Right-handed 310
Helix 13	AB4	B	204	211	Right-handed alpha
Helix 14	AB5	B	218	222	Right-handed 310
Helix 15	AB6	B	453	458	Right-handed alpha
Helix 16	AB7	B	551	563	Right-handed alpha
Helix 17	AB8	B	581	585	Right-handed 310

There are 14 sheets in PDB entry 5HO9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	61	first strand
Strand 2	A	64	69	anti-parallel
Strand 3	A	73	77	anti-parallel
Strand 4	A	83	85	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	137	first strand
Strand 2	A	143	153	anti-parallel
Strand 3	A	159	166	anti-parallel
Strand 4	A	174	182	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	243	first strand
Strand 2	A	249	253	anti-parallel
Strand 3	A	260	265	anti-parallel
Strand 4	A	292	296	anti-parallel
Strand 5	A	286	288	anti-parallel
Strand 6	A	279	280	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	311	first strand
Strand 2	A	316	323	anti-parallel
Strand 3	A	333	339	anti-parallel
Strand 4	A	367	370	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	437	439	first strand
Strand 2	A	422	431	anti-parallel
Strand 3	A	407	414	anti-parallel
Strand 4	A	387	400	anti-parallel
Strand 5	A	373	376	anti-parallel
Strand 6	A	475	476	parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	465	first strand
Strand 2	A	478	482	anti-parallel
Strand 3	A	487	490	anti-parallel
Strand 4	A	494	499	anti-parallel
Strand 5	A	503	508	anti-parallel
Strand 6	A	511	522	anti-parallel
Strand 7	A	527	536	anti-parallel
Strand 8	A	541	546	anti-parallel
Strand 9	A	459	465	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	586	591	first strand
Strand 2	A	613	622	anti-parallel
Strand 3	A	628	636	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	61	first strand
Strand 2	B	64	69	anti-parallel
Strand 3	B	73	77	anti-parallel
Strand 4	B	84	85	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	137	first strand
Strand 2	B	143	153	anti-parallel
Strand 3	B	159	166	anti-parallel
Strand 4	B	174	182	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	243	first strand
Strand 2	B	249	253	anti-parallel
Strand 3	B	260	265	anti-parallel
Strand 4	B	292	296	anti-parallel
Strand 5	B	286	288	anti-parallel
Strand 6	B	279	280	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	257	first strand
Strand 2	B	300	311	anti-parallel
Strand 3	B	316	323	anti-parallel
Strand 4	B	333	339	anti-parallel
Strand 5	B	367	370	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	439	first strand
Strand 2	B	422	431	anti-parallel
Strand 3	B	407	414	anti-parallel
Strand 4	B	387	400	anti-parallel
Strand 5	B	373	376	anti-parallel
Strand 6	B	475	476	parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	459	465	first strand
Strand 2	B	478	482	anti-parallel
Strand 3	B	487	490	anti-parallel
Strand 4	B	494	499	anti-parallel
Strand 5	B	503	508	anti-parallel
Strand 6	B	511	522	anti-parallel
Strand 7	B	527	536	anti-parallel
Strand 8	B	541	546	anti-parallel
Strand 9	B	459	465	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	586	591	first strand
Strand 2	B	613	623	anti-parallel
Strand 3	B	626	636	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5HO9

Analysis of interatomic Contacts of Structural Units in PDB entry:
5HO9