Analysis of interatomic Contacts of Structural Units in PDB entry:
5HOF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HOF entry

There is 1 chain in PDB entry 5HOF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 44THR 846
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5HOF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
100 105Right-handed alpha
Helix 2
AA2
A
105 110Right-handed alpha
Helix 3
AA3
A
116 120Right-handed 310
Helix 4
AA4
A
199 203Right-handed 310
Helix 5
AA5
A
204 211Right-handed alpha
Helix 6
AA6
A
218 222Right-handed 310
Helix 7
AA7
A
327 331Right-handed 310
Helix 8
AA8
A
453 458Right-handed alpha
Helix 9
AA9
A
551 563Right-handed alpha
Helix 10
AB1
A
582 584Right-handed 310
Helix 11
AB2
A
836 845Right-handed alpha
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There are 11 sheets in PDB entry 5HOF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 61first strand
Strand 2
A
64 68anti-parallel
Strand 3
A
74 77anti-parallel
Strand 4
A
84 85anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 137first strand
Strand 2
A
143 153anti-parallel
Strand 3
A
159 166anti-parallel
Strand 4
A
174 182anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 243first strand
Strand 2
A
249 253anti-parallel
Strand 3
A
260 265anti-parallel
Strand 4
A
292 296anti-parallel
Strand 5
A
286 288anti-parallel
Strand 6
A
279 280anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 311first strand
Strand 2
A
316 323anti-parallel
Strand 3
A
333 339anti-parallel
Strand 4
A
367 370anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 439first strand
Strand 2
A
423 431anti-parallel
Strand 3
A
407 414anti-parallel
Strand 4
A
389 400anti-parallel
Strand 5
A
373 374anti-parallel
Strand 6
A
475 476parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
459 465first strand
Strand 2
A
478 482anti-parallel
Strand 3
A
487 490anti-parallel
Strand 4
A
494 499anti-parallel
Strand 5
A
503 508anti-parallel
Strand 6
A
511 517anti-parallel
Strand 7
A
531 535anti-parallel
Strand 8
A
541 546anti-parallel
Strand 9
A
459 465anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
520 522first strand
Strand 2
A
527 529anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
580 581first strand
Strand 2
A
585 591anti-parallel
Strand 3
A
613 623anti-parallel
Strand 4
A
626 636anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
643 648first strand
Strand 2
A
822 832anti-parallel
Strand 3
A
688 693anti-parallel
Strand 4
A
679 683anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
643 648first strand
Strand 2
A
822 832anti-parallel
Strand 3
A
709 718anti-parallel
Strand 4
A
773 780anti-parallel
Strand 5
A
783 788anti-parallel
Strand 6
A
791 796anti-parallel
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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
666 668first strand
Strand 2
A
697 700anti-parallel
Strand 3
A
809 812anti-parallel
Strand 4
A
728 733anti-parallel
Strand 5
A
736 741anti-parallel
Strand 6
A
750 755anti-parallel
Strand 7
A
759 762anti-parallel
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