Analysis of interatomic Contacts of Structural Units in PDB entry:
5HOO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HOO entry

There are 8 chains in PDB entry 5HOO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3GLU 345
B
 SER 3GLU 345
C
 G 4 T 28
D
 A 29 G 7
E
 G 4 T 28
F
 A 29 G 7
G
 G -10 C -1
H
 G -10 C -1
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 5HOO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 21Right-handed alpha
Helix 2
AA2
A
24 37Right-handed alpha
Helix 3
AA3
A
38 40Right-handed 310
Helix 4
AA4
A
42 55Right-handed alpha
Helix 5
AA5
A
73 84Right-handed alpha
Helix 6
AA6
A
88 97Right-handed alpha
Helix 7
AA7
A
99 110Right-handed alpha
Helix 8
AA8
A
125 146Right-handed alpha
Helix 9
AA9
A
148 150Right-handed 310
Helix 10
AB1
A
215 234Right-handed alpha
Helix 11
AB2
A
251 256Right-handed alpha
Helix 12
AB3
A
256 267Right-handed alpha
Helix 13
AB4
A
277 280Right-handed 310
Helix 14
AB5
A
281 286Right-handed alpha
Helix 15
AB6
A
286 296Right-handed alpha
Helix 16
AB7
A
302 317Right-handed alpha
Helix 17
AB8
A
318 328Right-handed alpha
Helix 18
AB9
A
328 339Right-handed alpha
Helix 19
AC1
B
7 21Right-handed alpha
Helix 20
AC2
B
24 37Right-handed alpha
Helix 21
AC3
B
38 40Right-handed 310
Helix 22
AC4
B
42 55Right-handed alpha
Helix 23
AC5
B
73 84Right-handed alpha
Helix 24
AC6
B
88 97Right-handed alpha
Helix 25
AC7
B
99 110Right-handed alpha
Helix 26
AC8
B
125 146Right-handed alpha
Helix 27
AC9
B
148 150Right-handed 310
Helix 28
AD1
B
215 232Right-handed alpha
Helix 29
AD2
B
251 256Right-handed alpha
Helix 30
AD3
B
256 267Right-handed alpha
Helix 31
AD4
B
277 280Right-handed 310
Helix 32
AD5
B
281 286Right-handed alpha
Helix 33
AD6
B
286 296Right-handed alpha
Helix 34
AD7
B
302 317Right-handed alpha
Helix 35
AD8
B
318 328Right-handed alpha
Helix 36
AD9
B
328 339Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5HOO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 116first strand
Strand 2
B
169 172anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 120first strand
Strand 2
B
181 182parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 208first strand
Strand 2
A
190 198anti-parallel
Strand 3
A
152 161anti-parallel
Strand 4
A
245 247parallel
Strand 5
A
269 270parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 172first strand
Strand 2
B
113 116anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 182first strand
Strand 2
B
119 120parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 208first strand
Strand 2
B
190 198anti-parallel
Strand 3
B
152 161anti-parallel
Strand 4
B
245 247parallel
Strand 5
B
269 270parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il