Analysis of interatomic Contacts of Structural Units in PDB entry:
5HOP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HOP entry

There are 2 chains in PDB entry 5HOP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1SER 239
B
 MSE 1SER 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5HOP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 16Right-handed alpha
Helix 2
AA2
A
18 29Right-handed alpha
Helix 3
AA3
A
37 51Right-handed alpha
Helix 4
AA4
A
55 70Right-handed alpha
Helix 5
AA5
A
86 104Right-handed alpha
Helix 6
AA6
A
106 108Right-handed 310
Helix 7
AA7
A
109 124Right-handed alpha
Helix 8
AA8
A
140 147Right-handed 310
Helix 9
AA9
A
157 171Right-handed alpha
Helix 10
AB1
A
187 202Right-handed alpha
Helix 11
AB2
A
203 217Right-handed alpha
Helix 12
AB3
A
221 239Right-handed alpha
Helix 13
AB4
B
2 16Right-handed alpha
Helix 14
AB5
B
18 29Right-handed alpha
Helix 15
AB6
B
37 51Right-handed alpha
Helix 16
AB7
B
55 70Right-handed alpha
Helix 17
AB8
B
86 104Right-handed alpha
Helix 18
AB9
B
106 108Right-handed 310
Helix 19
AC1
B
109 124Right-handed alpha
Helix 20
AC2
B
140 147Right-handed 310
Helix 21
AC3
B
157 171Right-handed alpha
Helix 22
AC4
B
187 202Right-handed alpha
Helix 23
AC5
B
203 217Right-handed alpha
Helix 24
AC6
B
221 239Right-handed alpha
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There are 4 sheets in PDB entry 5HOP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 126first strand
Strand 2
A
129 130anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
176 177anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 126first strand
Strand 2
B
129 130anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 173first strand
Strand 2
B
176 177anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il