Analysis of interatomic Contacts of Structural Units in PDB entry:
5HOQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HOQ entry

There are 3 chains in PDB entry 5HOQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 7ASP 257
B
 GLN 7ASP 257
C
 GLN 7ILE 183
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 5HOQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 12Right-handed 310
Helix 2
AA2
A
16 32Right-handed alpha
Helix 3
AA3
A
36 48Right-handed 310
Helix 4
AA4
A
49 66Right-handed alpha
Helix 5
AA5
A
81 95Right-handed alpha
Helix 6
AA6
A
135 149Right-handed alpha
Helix 7
AA7
A
166 178Right-handed alpha
Helix 8
AA8
A
192 204Right-handed alpha
Helix 9
AA9
A
224 234Right-handed alpha
Helix 10
AB1
B
8 12Right-handed 310
Helix 11
AB2
B
16 32Right-handed alpha
Helix 12
AB3
B
36 48Right-handed 310
Helix 13
AB4
B
49 65Right-handed alpha
Helix 14
AB5
B
81 95Right-handed alpha
Helix 15
AB6
B
135 149Right-handed alpha
Helix 16
AB7
B
166 178Right-handed alpha
Helix 17
AB8
B
192 204Right-handed alpha
Helix 18
AB9
B
224 234Right-handed alpha
Helix 19
AC1
C
8 12Right-handed 310
Helix 20
AC2
C
16 32Right-handed alpha
Helix 21
AC3
C
36 48Right-handed 310
Helix 22
AC4
C
49 66Right-handed alpha
Helix 23
AC5
C
81 95Right-handed alpha
Helix 24
AC6
C
135 149Right-handed alpha
Helix 25
AC7
C
166 178Right-handed alpha
Helix 26
AC8
C
192 204Right-handed alpha
Helix 27
AC9
C
224 234Right-handed alpha
Helix 28
AD1
D
8 12Right-handed 310
Helix 29
AD2
D
16 32Right-handed alpha
Helix 30
AD3
D
36 48Right-handed 310
Helix 31
AD4
D
49 66Right-handed alpha
Helix 32
AD5
D
81 95Right-handed alpha
Helix 33
AD6
D
135 149Right-handed alpha
Helix 34
AD7
D
166 178Right-handed alpha
Helix 35
AD8
D
192 204Right-handed alpha
Helix 36
AD9
D
224 234Right-handed alpha
Helix 37
AE1
E
8 12Right-handed 310
Helix 38
AE2
E
16 32Right-handed alpha
Helix 39
AE3
E
36 48Right-handed 310
Helix 40
AE4
E
49 66Right-handed alpha
Helix 41
AE5
E
81 95Right-handed alpha
Helix 42
AE6
E
135 149Right-handed alpha
Helix 43
AE7
E
166 178Right-handed alpha
Helix 44
AE8
E
192 204Right-handed alpha
Helix 45
AE9
E
224 234Right-handed alpha
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There are 5 sheets in PDB entry 5HOQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 164first strand
Strand 2
A
103 107parallel
Strand 3
A
72 76parallel
Strand 4
A
183 188parallel
Strand 5
A
207 215parallel
Strand 6
A
251 254anti-parallel
Strand 7
A
242 243anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 164first strand
Strand 2
B
103 107parallel
Strand 3
B
72 76parallel
Strand 4
B
183 188parallel
Strand 5
B
207 215parallel
Strand 6
B
251 254anti-parallel
Strand 7
B
242 243anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
160 164first strand
Strand 2
C
103 107parallel
Strand 3
C
72 76parallel
Strand 4
C
183 188parallel
Strand 5
C
207 215parallel
Strand 6
C
251 254anti-parallel
Strand 7
C
242 243anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
160 164first strand
Strand 2
D
103 107parallel
Strand 3
D
72 76parallel
Strand 4
D
183 188parallel
Strand 5
D
207 215parallel
Strand 6
D
251 254anti-parallel
Strand 7
D
242 243anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
160 164first strand
Strand 2
E
103 107parallel
Strand 3
E
72 76parallel
Strand 4
E
183 188parallel
Strand 5
E
207 215parallel
Strand 6
E
251 254anti-parallel
Strand 7
E
242 243anti-parallel
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