Analysis of interatomic Contacts of Structural Units in PDB entry:
5HP4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HP4 entry

There are 2 chains in PDB entry 5HP4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 G 1 G 17
A
 ARG 20GLN 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5HP4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 32Right-handed alpha
Helix 2
AA2
A
33 35Right-handed 310
Helix 3
AA3
A
43 58Right-handed alpha
Helix 4
AA4
A
72 79Right-handed alpha
Helix 5
AA5
A
83 92Right-handed alpha
Helix 6
AA6
A
94 119Right-handed alpha
Helix 7
AA7
A
128 141Right-handed alpha
Helix 8
AA8
A
142 144Right-handed 310
Helix 9
AA9
A
153 160Right-handed 310
Helix 10
AB1
A
176 178Right-handed 310
Helix 11
AB2
A
179 185Right-handed alpha
Helix 12
AB3
A
188 199Right-handed alpha
Helix 13
AB4
A
202 205Right-handed 310
Helix 14
AB5
A
213 225Right-handed alpha
Helix 15
AB6
A
226 233Right-handed alpha
Helix 16
AB7
A
240 248Right-handed alpha
Helix 17
AB8
A
249 261Right-handed alpha
Helix 18
AB9
A
261 272Right-handed alpha
Helix 19
AC1
A
274 291Right-handed alpha
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There are 2 sheets in PDB entry 5HP4. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 122first strand
Strand 2
A
60 66parallel
Strand 3
A
21 26parallel
Strand 4
A
147 150parallel
Strand 5
A
164 167parallel
Strand 6
A
174 175anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 201first strand
Strand 2
A
206 207anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il