Analysis of interatomic Contacts of Structural Units in PDB entry:
5HP5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5HP5 entry

There are 2 chains in PDB entry 5HP5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS -5	PRO 663
B	HIS -5	PRO 663

There are 35 helices in PDB entry 5HP5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	164	168	Right-handed 310
Helix 2	AA2	A	174	180	Right-handed 310
Helix 3	AA3	A	190	195	Right-handed alpha
Helix 4	AA4	A	221	223	Right-handed 310
Helix 5	AA5	A	318	332	Right-handed alpha
Helix 6	AA6	A	340	345	Right-handed alpha
Helix 7	AA7	A	380	385	Right-handed alpha
Helix 8	AA8	A	404	410	Right-handed 310
Helix 9	AA9	A	445	455	Right-handed alpha
Helix 10	AB1	A	495	507	Right-handed alpha
Helix 11	AB2	A	527	532	Right-handed alpha
Helix 12	AB3	A	535	559	Right-handed alpha
Helix 13	AB4	A	611	621	Right-handed alpha
Helix 14	AB5	A	622	624	Right-handed 310
Helix 15	AB6	A	636	640	Right-handed 310
Helix 16	AB7	A	642	646	Right-handed alpha
Helix 17	AB8	A	657	661	Right-handed 310
Helix 18	AB9	B	164	168	Right-handed 310
Helix 19	AC1	B	174	180	Right-handed 310
Helix 20	AC2	B	192	197	Right-handed alpha
Helix 21	AC3	B	207	209	Right-handed 310
Helix 22	AC4	B	221	223	Right-handed 310
Helix 23	AC5	B	318	332	Right-handed alpha
Helix 24	AC6	B	340	345	Right-handed alpha
Helix 25	AC7	B	380	385	Right-handed alpha
Helix 26	AC8	B	404	410	Right-handed 310
Helix 27	AC9	B	445	455	Right-handed alpha
Helix 28	AD1	B	495	505	Right-handed alpha
Helix 29	AD2	B	527	533	Right-handed alpha
Helix 30	AD3	B	535	559	Right-handed alpha
Helix 31	AD4	B	611	621	Right-handed alpha
Helix 32	AD5	B	622	624	Right-handed 310
Helix 33	AD6	B	636	640	Right-handed 310
Helix 34	AD7	B	642	646	Right-handed alpha
Helix 35	AD8	B	657	661	Right-handed 310

There are 25 sheets in PDB entry 5HP5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	20	first strand
Strand 2	A	106	121	parallel
Strand 3	A	90	97	anti-parallel
Strand 4	A	39	45	anti-parallel
Strand 5	A	68	69	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	20	first strand
Strand 2	A	106	121	parallel
Strand 3	A	181	188	anti-parallel
Strand 4	A	246	253	anti-parallel
Strand 5	A	211	216	anti-parallel
Strand 6	A	225	229	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	26	first strand
Strand 2	A	77	80	anti-parallel
Strand 3	A	48	53	anti-parallel
Strand 4	A	60	62	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	150	first strand
Strand 2	A	280	291	parallel
Strand 3	A	264	273	anti-parallel
Strand 4	A	198	202	anti-parallel
Strand 5	A	235	237	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	296	first strand
Strand 2	A	354	360	anti-parallel
Strand 3	A	365	371	anti-parallel
Strand 4	A	392	395	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	339	first strand
Strand 2	A	303	309	parallel
Strand 3	A	647	651	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	412	414	first strand
Strand 2	A	430	434	anti-parallel
Strand 3	A	461	464	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	420	first strand
Strand 2	A	423	425	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	481	first strand
Strand 2	A	488	494	anti-parallel
Strand 3	A	565	569	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	572	575	first strand
Strand 2	A	578	581	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	590	592	first strand
Strand 2	A	595	599	anti-parallel
Strand 3	A	626	630	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	605	606	first strand
Strand 2	A	609	610	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	7	first strand
Strand 2	B	25	27	parallel
Strand 3	B	77	80	anti-parallel
Strand 4	B	48	53	anti-parallel
Strand 5	B	60	62	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	20	first strand
Strand 2	B	107	115	parallel
Strand 3	B	90	97	anti-parallel
Strand 4	B	39	45	anti-parallel
Strand 5	B	68	69	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	120	first strand
Strand 2	B	181	186	anti-parallel
Strand 3	B	246	253	anti-parallel
Strand 4	B	211	216	anti-parallel
Strand 5	B	225	229	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	150	first strand
Strand 2	B	280	291	parallel
Strand 3	B	264	273	anti-parallel
Strand 4	B	198	202	anti-parallel
Strand 5	B	235	237	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	296	first strand
Strand 2	B	354	360	anti-parallel
Strand 3	B	365	371	anti-parallel
Strand 4	B	392	395	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	339	first strand
Strand 2	B	303	309	parallel
Strand 3	B	647	651	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	412	414	first strand
Strand 2	B	430	434	anti-parallel
Strand 3	B	461	464	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	420	first strand
Strand 2	B	423	425	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	477	481	first strand
Strand 2	B	488	494	anti-parallel
Strand 3	B	565	569	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	514	515	first strand
Strand 2	B	525	526	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	572	575	first strand
Strand 2	B	578	581	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	590	592	first strand
Strand 2	B	595	599	anti-parallel
Strand 3	B	626	630	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	605	606	first strand
Strand 2	B	609	610	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5HP5

Analysis of interatomic Contacts of Structural Units in PDB entry:
5HP5