Analysis of interatomic Contacts of Structural Units in PDB entry:
5HP8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HP8 entry

There are 3 chains in PDB entry 5HP8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 80LEU 187
B
 SER 80LEU 187
C
 SER 80LEU 187
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5HP8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
108 127Right-handed alpha
Helix 2
AA2
A
130 132Right-handed 310
Helix 3
AA3
A
146 158Right-handed alpha
Helix 4
AA4
A
173 177Right-handed 310
Helix 5
AA5
B
108 127Right-handed alpha
Helix 6
AA6
B
130 132Right-handed 310
Helix 7
AA7
B
143 145Right-handed 310
Helix 8
AA8
B
146 158Right-handed alpha
Helix 9
AA9
B
173 177Right-handed 310
Helix 10
AB1
C
108 127Right-handed alpha
Helix 11
AB2
C
130 132Right-handed 310
Helix 12
AB3
C
143 145Right-handed 310
Helix 13
AB4
C
146 158Right-handed alpha
Helix 14
AB5
C
173 177Right-handed 310
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There are 3 sheets in PDB entry 5HP8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 85first strand
Strand 2
A
88 94anti-parallel
Strand 3
A
179 186anti-parallel
Strand 4
A
134 141anti-parallel
Strand 5
A
164 169parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 85first strand
Strand 2
B
88 94anti-parallel
Strand 3
B
179 186anti-parallel
Strand 4
B
134 141anti-parallel
Strand 5
B
164 169parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
82 85first strand
Strand 2
C
88 95anti-parallel
Strand 3
C
179 186anti-parallel
Strand 4
C
134 141anti-parallel
Strand 5
C
164 169parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il