Analysis of interatomic Contacts of Structural Units in PDB entry:
5HPH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5HPH entry

There are 2 chains in PDB entry 5HPH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 70	GLU 551
B	PRO 70	THR 552

There are 37 helices in PDB entry 5HPH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	93	104	Right-handed alpha
Helix 2	AA2	A	110	134	Right-handed alpha
Helix 3	AA3	A	164	172	Right-handed alpha
Helix 4	AA4	A	178	188	Right-handed alpha
Helix 5	AA5	A	191	196	Right-handed 310
Helix 6	AA6	A	203	210	Right-handed 310
Helix 7	AA7	A	261	265	Right-handed 310
Helix 8	AA8	A	266	278	Right-handed alpha
Helix 9	AA9	A	302	306	Right-handed 310
Helix 10	AB1	A	307	320	Right-handed alpha
Helix 11	AB2	A	381	385	Right-handed 310
Helix 12	AB3	A	408	433	Right-handed alpha
Helix 13	AB4	A	433	455	Right-handed alpha
Helix 14	AB5	A	457	466	Right-handed alpha
Helix 15	AB6	A	482	489	Right-handed alpha
Helix 16	AB7	A	504	511	Right-handed alpha
Helix 17	AB8	A	511	519	Right-handed alpha
Helix 18	AB9	A	531	540	Right-handed alpha
Helix 19	AC1	B	93	105	Right-handed alpha
Helix 20	AC2	B	110	135	Right-handed alpha
Helix 21	AC3	B	164	173	Right-handed alpha
Helix 22	AC4	B	178	187	Right-handed alpha
Helix 23	AC5	B	191	196	Right-handed 310
Helix 24	AC6	B	203	210	Right-handed 310
Helix 25	AC7	B	261	265	Right-handed 310
Helix 26	AC8	B	266	278	Right-handed alpha
Helix 27	AC9	B	302	306	Right-handed 310
Helix 28	AD1	B	307	319	Right-handed alpha
Helix 29	AD2	B	351	357	Right-handed alpha
Helix 30	AD3	B	381	385	Right-handed 310
Helix 31	AD4	B	407	433	Right-handed alpha
Helix 32	AD5	B	433	455	Right-handed alpha
Helix 33	AD6	B	457	466	Right-handed alpha
Helix 34	AD7	B	482	489	Right-handed alpha
Helix 35	AD8	B	504	510	Right-handed alpha
Helix 36	AD9	B	511	519	Right-handed alpha
Helix 37	AE1	B	531	540	Right-handed alpha

There are 10 sheets in PDB entry 5HPH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	81	first strand
Strand 2	B	238	245	anti-parallel
Strand 3	A	86	89	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	81	first strand
Strand 2	B	238	245	anti-parallel
Strand 3	B	228	233	anti-parallel
Strand 4	B	212	220	anti-parallel
Strand 5	B	250	257	anti-parallel
Strand 6	B	153	158	anti-parallel
Strand 7	B	143	148	anti-parallel
Strand 8	B	285	287	parallel
Strand 9	B	290	291	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	92	first strand
Strand 2	B	174	175	parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	291	first strand
Strand 2	A	285	287	anti-parallel
Strand 3	A	143	148	parallel
Strand 4	A	153	158	anti-parallel
Strand 5	A	250	257	anti-parallel
Strand 6	A	212	220	anti-parallel
Strand 7	A	228	233	anti-parallel
Strand 8	A	238	245	anti-parallel
Strand 9	B	80	81	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	291	first strand
Strand 2	A	285	287	anti-parallel
Strand 3	A	143	148	parallel
Strand 4	A	153	158	anti-parallel
Strand 5	A	250	257	anti-parallel
Strand 6	A	212	220	anti-parallel
Strand 7	A	228	233	anti-parallel
Strand 8	A	238	245	anti-parallel
Strand 9	B	86	89	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	175	first strand
Strand 2	B	91	92	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	334	first strand
Strand 2	A	338	346	anti-parallel
Strand 3	A	388	393	anti-parallel
Strand 4	A	363	367	parallel
Strand 5	A	370	373	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	471	472	first strand
Strand 2	A	524	527	anti-parallel
Strand 3	A	497	501	parallel
Strand 4	A	545	549	parallel
Strand 5	A	541	542	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	333	first strand
Strand 2	B	339	346	anti-parallel
Strand 3	B	388	392	anti-parallel
Strand 4	B	363	367	parallel
Strand 5	B	370	376	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	471	472	first strand
Strand 2	B	524	527	anti-parallel
Strand 3	B	496	501	parallel
Strand 4	B	545	549	parallel
Strand 5	B	541	542	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5HPH

Analysis of interatomic Contacts of Structural Units in PDB entry:
5HPH