Analysis of interatomic Contacts of Structural Units in PDB entry:
5HPI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HPI entry

There are 4 chains in PDB entry 5HPI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 96VAL 271
B
 PRO 99VAL 271
C
 HIS 97VAL 271
D
 ALA 96VAL 271
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5HPI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
101 114Right-handed alpha
Helix 2
AA2
A
159 168Right-handed alpha
Helix 3
AA3
A
170 182Right-handed alpha
Helix 4
AA4
A
193 208Right-handed alpha
Helix 5
AA5
A
248 255Right-handed alpha
Helix 6
AA6
A
255 269Right-handed alpha
Helix 7
AA7
B
102 114Right-handed alpha
Helix 8
AA8
B
159 168Right-handed alpha
Helix 9
AA9
B
170 182Right-handed alpha
Helix 10
AB1
B
193 205Right-handed alpha
Helix 11
AB2
B
206 208Right-handed 310
Helix 12
AB3
B
248 255Right-handed alpha
Helix 13
AB4
B
255 267Right-handed alpha
Helix 14
AB5
C
101 114Right-handed alpha
Helix 15
AB6
C
159 168Right-handed alpha
Helix 16
AB7
C
170 182Right-handed alpha
Helix 17
AB8
C
193 208Right-handed alpha
Helix 18
AB9
C
248 255Right-handed alpha
Helix 19
AC1
C
256 269Right-handed alpha
Helix 20
AC2
D
101 114Right-handed alpha
Helix 21
AC3
D
159 168Right-handed alpha
Helix 22
AC4
D
170 180Right-handed alpha
Helix 23
AC5
D
193 208Right-handed alpha
Helix 24
AC6
D
250 255Right-handed alpha
Helix 25
AC7
D
255 271Right-handed alpha
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There are 4 sheets in PDB entry 5HPI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 155first strand
Strand 2
A
126 132anti-parallel
Strand 3
A
116 123anti-parallel
Strand 4
A
234 243anti-parallel
Strand 5
A
220 228anti-parallel
Strand 6
A
210 213anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 155first strand
Strand 2
B
126 132anti-parallel
Strand 3
B
116 123anti-parallel
Strand 4
B
234 243anti-parallel
Strand 5
B
220 228anti-parallel
Strand 6
B
210 213anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
154 155first strand
Strand 2
C
126 132anti-parallel
Strand 3
C
116 123anti-parallel
Strand 4
C
234 242anti-parallel
Strand 5
C
221 228anti-parallel
Strand 6
C
210 213anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
154 155first strand
Strand 2
D
126 132anti-parallel
Strand 3
D
116 123anti-parallel
Strand 4
D
234 243anti-parallel
Strand 5
D
220 228anti-parallel
Strand 6
D
210 213anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il