Analysis of interatomic Contacts of Structural Units in PDB entry:
5HPJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HPJ entry

There is 1 chain in PDB entry 5HPJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 14GLU 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 5HPJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 29Right-handed 310
Helix 2
AA2
A
30 36Right-handed alpha
Helix 3
AA3
A
139 146Right-handed alpha
Helix 4
AA4
A
163 168Right-handed 310
Helix 5
AA5
A
203 214Right-handed alpha
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There are 3 sheets in PDB entry 5HPJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
104 105parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
81 85anti-parallel
Strand 3
A
88 98anti-parallel
Strand 4
A
112 119anti-parallel
Strand 5
A
125 135anti-parallel
Strand 6
A
188 195parallel
Strand 7
A
174 180anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 157first strand
Strand 2
A
62 68anti-parallel
Strand 3
A
73 78anti-parallel
Strand 4
A
88 98anti-parallel
Strand 5
A
112 119anti-parallel
Strand 6
A
125 135anti-parallel
Strand 7
A
199 202parallel
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