Analysis of interatomic Contacts of Structural Units in PDB entry:
5HPK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HPK entry

There are 2 chains in PDB entry 5HPK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 573GLN 949
B
 HIS 0GLU 77
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5HPK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
574 588Right-handed alpha
Helix 2
AA2
A
603 605Right-handed 310
Helix 3
AA3
A
606 617Right-handed alpha
Helix 4
AA4
A
620 626Right-handed 310
Helix 5
AA5
A
640 656Right-handed alpha
Helix 6
AA6
A
657 661Right-handed 310
Helix 7
AA7
A
678 683Right-handed alpha
Helix 8
AA8
A
685 703Right-handed alpha
Helix 9
AA9
A
712 720Right-handed alpha
Helix 10
AB1
A
725 730Right-handed alpha
Helix 11
AB2
A
733 746Right-handed alpha
Helix 12
AB3
A
748 752Right-handed 310
Helix 13
AB4
A
773 777Right-handed 310
Helix 14
AB5
A
783 797Right-handed alpha
Helix 15
AB6
A
800 812Right-handed alpha
Helix 16
AB7
A
816 821Right-handed alpha
Helix 17
AB8
A
824 833Right-handed alpha
Helix 18
AB9
A
839 845Right-handed alpha
Helix 19
AC1
A
857 870Right-handed alpha
Helix 20
AC2
A
871 884Right-handed alpha
Helix 21
AC3
A
892 896Right-handed 310
Helix 22
AC4
A
921 923Right-handed 310
Helix 23
AC5
A
933 948Right-handed alpha
Helix 24
AC6
B
22 35Right-handed alpha
Helix 25
AC7
B
37 39Right-handed 310
Helix 26
AC8
B
56 60Right-handed 310
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There are 5 sheets in PDB entry 5HPK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
597 602first strand
Strand 2
A
627 632parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
663 665first strand
Strand 2
A
673 675anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
756 761first strand
Strand 2
A
764 769anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
847 850first strand
Strand 2
A
905 909parallel
Strand 3
A
925 928parallel
Strand 4
A
918 920anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 16first strand
Strand 2
B
2 7anti-parallel
Strand 3
B
66 71parallel
Strand 4
B
41 45anti-parallel
Strand 5
B
48 49anti-parallel
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