Analysis of interatomic Contacts of Structural Units in PDB entry:
5HPL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5HPL entry

There are 4 chains in PDB entry 5HPL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 434	THR 803
B	ARG 433	GLU 802
C	HIS -3	ILE 77
D	HIS -3	ILE 77

There are 48 helices in PDB entry 5HPL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	434	444	Right-handed alpha
Helix 2	AA2	A	445	449	Right-handed 310
Helix 3	AA3	A	460	462	Right-handed 310
Helix 4	AA4	A	463	474	Right-handed alpha
Helix 5	AA5	A	478	480	Right-handed 310
Helix 6	AA6	A	495	512	Right-handed alpha
Helix 7	AA7	A	513	517	Right-handed 310
Helix 8	AA8	A	534	538	Right-handed 310
Helix 9	AA9	A	540	558	Right-handed alpha
Helix 10	AB1	A	567	575	Right-handed alpha
Helix 11	AB2	A	580	587	Right-handed 310
Helix 12	AB3	A	588	601	Right-handed alpha
Helix 13	AB4	A	629	633	Right-handed 310
Helix 14	AB5	A	639	653	Right-handed alpha
Helix 15	AB6	A	656	669	Right-handed alpha
Helix 16	AB7	A	672	677	Right-handed alpha
Helix 17	AB8	A	680	690	Right-handed alpha
Helix 18	AB9	A	695	702	Right-handed alpha
Helix 19	AC1	A	712	725	Right-handed alpha
Helix 20	AC2	A	726	739	Right-handed alpha
Helix 21	AC3	A	747	750	Right-handed 310
Helix 22	AC4	A	788	802	Right-handed alpha
Helix 23	AC5	B	434	444	Right-handed alpha
Helix 24	AC6	B	445	449	Right-handed 310
Helix 25	AC7	B	463	474	Right-handed alpha
Helix 26	AC8	B	495	512	Right-handed alpha
Helix 27	AC9	B	513	517	Right-handed 310
Helix 28	AD1	B	534	538	Right-handed 310
Helix 29	AD2	B	540	558	Right-handed alpha
Helix 30	AD3	B	567	575	Right-handed alpha
Helix 31	AD4	B	580	582	Right-handed 310
Helix 32	AD5	B	583	588	Right-handed alpha
Helix 33	AD6	B	588	601	Right-handed alpha
Helix 34	AD7	B	629	633	Right-handed 310
Helix 35	AD8	B	639	653	Right-handed alpha
Helix 36	AD9	B	656	669	Right-handed alpha
Helix 37	AE1	B	672	677	Right-handed alpha
Helix 38	AE2	B	680	690	Right-handed alpha
Helix 39	AE3	B	695	702	Right-handed alpha
Helix 40	AE4	B	712	724	Right-handed alpha
Helix 41	AE5	B	726	739	Right-handed alpha
Helix 42	AE6	B	747	750	Right-handed 310
Helix 43	AE7	B	788	802	Right-handed alpha
Helix 44	AE8	C	22	35	Right-handed alpha
Helix 45	AE9	C	37	39	Right-handed 310
Helix 46	AF1	C	56	60	Right-handed 310
Helix 47	AF2	D	22	35	Right-handed alpha
Helix 48	AF3	D	37	39	Right-handed 310

There are 12 sheets in PDB entry 5HPL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	459	first strand
Strand 2	A	482	488	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	519	521	first strand
Strand 2	A	529	531	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	612	617	first strand
Strand 2	A	620	625	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	703	706	first strand
Strand 2	A	760	763	parallel
Strand 3	A	780	782	parallel
Strand 4	A	773	775	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	752	753	first strand
Strand 2	A	756	757	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	451	460	first strand
Strand 2	B	482	489	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	519	521	first strand
Strand 2	B	529	531	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	612	617	first strand
Strand 2	B	620	625	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	703	706	first strand
Strand 2	B	760	763	parallel
Strand 3	B	780	782	parallel
Strand 4	B	773	775	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	752	753	first strand
Strand 2	B	756	757	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	17	first strand
Strand 2	C	1	6	anti-parallel
Strand 3	C	65	71	parallel
Strand 4	C	41	45	anti-parallel
Strand 5	C	48	49	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	17	first strand
Strand 2	D	1	6	anti-parallel
Strand 3	D	66	71	parallel
Strand 4	D	41	45	anti-parallel
Strand 5	D	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5HPL

Analysis of interatomic Contacts of Structural Units in PDB entry:
5HPL