Analysis of interatomic Contacts of Structural Units in PDB entry:
5HPS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HPS entry

There are 2 chains in PDB entry 5HPS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 541GLU 917
B
 MET 1LEU 73
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5HPS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
546 560Right-handed alpha
Helix 2
AA2
A
575 587Right-handed alpha
Helix 3
AA3
A
588 594Right-handed 310
Helix 4
AA4
A
610 624Right-handed alpha
Helix 5
AA5
A
625 629Right-handed 310
Helix 6
AA6
A
645 650Right-handed 310
Helix 7
AA7
A
652 670Right-handed alpha
Helix 8
AA8
A
679 687Right-handed alpha
Helix 9
AA9
A
692 700Right-handed alpha
Helix 10
AB1
A
700 713Right-handed alpha
Helix 11
AB2
A
714 719Right-handed alpha
Helix 12
AB3
A
751 766Right-handed alpha
Helix 13
AB4
A
769 784Right-handed alpha
Helix 14
AB5
A
785 792Right-handed 310
Helix 15
AB6
A
793 803Right-handed alpha
Helix 16
AB7
A
808 815Right-handed alpha
Helix 17
AB8
A
825 838Right-handed alpha
Helix 18
AB9
A
839 852Right-handed alpha
Helix 19
AC1
A
859 863Right-handed 310
Helix 20
AC2
A
889 891Right-handed 310
Helix 21
AC3
A
901 915Right-handed alpha
Helix 22
AC4
B
22 35Right-handed alpha
Helix 23
AC5
B
37 39Right-handed 310
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There are 6 sheets in PDB entry 5HPS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
566 571first strand
Strand 2
A
595 600parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
631 633first strand
Strand 2
A
641 643anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
725 730first strand
Strand 2
A
733 738anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
817 819first strand
Strand 2
A
874 876parallel
Strand 3
A
893 895parallel
Strand 4
A
886 888anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
865 866first strand
Strand 2
A
869 870anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
2 6anti-parallel
Strand 3
B
65 71parallel
Strand 4
B
41 45anti-parallel
Strand 5
B
48 49anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il