Analysis of interatomic Contacts of Structural Units in PDB entry:
5HPT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5HPT entry

There are 8 chains in PDB entry 5HPT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 545	GLU 917
B	MSE 1	GLN 76
C	ALA 2	PRO 152
D	ARG 545	GLU 917
E	MSE 1	GLN 76
F	ALA 2	ARG 151
G	GLY 546	GLU 917
H	MSE 1	GLY 75

There are 81 helices in PDB entry 5HPT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	546	560	Right-handed alpha
Helix 2	AA2	A	572	574	Right-handed 310
Helix 3	AA3	A	575	586	Right-handed alpha
Helix 4	AA4	A	588	594	Right-handed 310
Helix 5	AA5	A	613	624	Right-handed alpha
Helix 6	AA6	A	625	629	Right-handed 310
Helix 7	AA7	A	645	650	Right-handed 310
Helix 8	AA8	A	652	671	Right-handed alpha
Helix 9	AA9	A	679	687	Right-handed alpha
Helix 10	AB1	A	692	700	Right-handed alpha
Helix 11	AB2	A	700	713	Right-handed alpha
Helix 12	AB3	A	742	746	Right-handed 310
Helix 13	AB4	A	752	767	Right-handed alpha
Helix 14	AB5	A	769	784	Right-handed alpha
Helix 15	AB6	A	785	790	Right-handed 310
Helix 16	AB7	A	793	802	Right-handed alpha
Helix 17	AB8	A	808	815	Right-handed alpha
Helix 18	AB9	A	825	838	Right-handed alpha
Helix 19	AC1	A	839	852	Right-handed alpha
Helix 20	AC2	A	860	864	Right-handed 310
Helix 21	AC3	A	901	915	Right-handed alpha
Helix 22	AC4	B	22	35	Right-handed alpha
Helix 23	AC5	B	37	39	Right-handed 310
Helix 24	AC6	C	4	16	Right-handed alpha
Helix 25	AC7	C	87	91	Right-handed 310
Helix 26	AC8	C	100	114	Right-handed alpha
Helix 27	AC9	C	122	131	Right-handed alpha
Helix 28	AD1	C	132	148	Right-handed alpha
Helix 29	AD2	D	546	561	Right-handed alpha
Helix 30	AD3	D	572	574	Right-handed 310
Helix 31	AD4	D	575	585	Right-handed alpha
Helix 32	AD5	D	588	594	Right-handed 310
Helix 33	AD6	D	604	608	Right-handed 310
Helix 34	AD7	D	613	624	Right-handed alpha
Helix 35	AD8	D	625	629	Right-handed 310
Helix 36	AD9	D	646	650	Right-handed 310
Helix 37	AE1	D	652	670	Right-handed alpha
Helix 38	AE2	D	679	687	Right-handed alpha
Helix 39	AE3	D	695	700	Right-handed alpha
Helix 40	AE4	D	700	713	Right-handed alpha
Helix 41	AE5	D	742	746	Right-handed 310
Helix 42	AE6	D	752	767	Right-handed alpha
Helix 43	AE7	D	769	784	Right-handed alpha
Helix 44	AE8	D	785	790	Right-handed 310
Helix 45	AE9	D	793	802	Right-handed alpha
Helix 46	AF1	D	810	815	Right-handed alpha
Helix 47	AF2	D	825	838	Right-handed alpha
Helix 48	AF3	D	840	852	Right-handed alpha
Helix 49	AF4	D	860	864	Right-handed 310
Helix 50	AF5	D	901	913	Right-handed alpha
Helix 51	AF6	E	22	35	Right-handed alpha
Helix 52	AF7	E	37	39	Right-handed 310
Helix 53	AF8	F	3	16	Right-handed alpha
Helix 54	AF9	F	87	91	Right-handed 310
Helix 55	AG1	F	100	114	Right-handed alpha
Helix 56	AG2	F	122	131	Right-handed alpha
Helix 57	AG3	F	132	147	Right-handed alpha
Helix 58	AG4	G	547	561	Right-handed alpha
Helix 59	AG5	G	572	574	Right-handed 310
Helix 60	AG6	G	575	586	Right-handed alpha
Helix 61	AG7	G	588	594	Right-handed 310
Helix 62	AG8	G	612	624	Right-handed alpha
Helix 63	AG9	G	625	629	Right-handed 310
Helix 64	AH1	G	645	650	Right-handed 310
Helix 65	AH2	G	652	671	Right-handed alpha
Helix 66	AH3	G	679	687	Right-handed alpha
Helix 67	AH4	G	692	700	Right-handed alpha
Helix 68	AH5	G	700	713	Right-handed alpha
Helix 69	AH6	G	742	746	Right-handed 310
Helix 70	AH7	G	752	767	Right-handed alpha
Helix 71	AH8	G	769	784	Right-handed alpha
Helix 72	AH9	G	785	790	Right-handed 310
Helix 73	AI1	G	793	802	Right-handed alpha
Helix 74	AI2	G	808	815	Right-handed alpha
Helix 75	AI3	G	825	837	Right-handed alpha
Helix 76	AI4	G	839	852	Right-handed alpha
Helix 77	AI5	G	860	864	Right-handed 310
Helix 78	AI6	G	901	903	Right-handed 310
Helix 79	AI7	G	904	915	Right-handed alpha
Helix 80	AI8	H	22	35	Right-handed alpha
Helix 81	AI9	H	37	39	Right-handed 310

There are 17 sheets in PDB entry 5HPT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	566	571	first strand
Strand 2	A	595	600	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	631	633	first strand
Strand 2	A	641	643	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	725	730	first strand
Strand 2	A	733	738	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	817	819	first strand
Strand 2	A	874	876	parallel
Strand 3	A	893	895	parallel
Strand 4	A	886	888	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	16	first strand
Strand 2	B	2	7	anti-parallel
Strand 3	B	66	71	parallel
Strand 4	B	41	45	anti-parallel
Strand 5	B	48	49	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	27	first strand
Strand 2	C	34	39	anti-parallel
Strand 3	C	51	56	anti-parallel
Strand 4	C	67	70	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	566	571	first strand
Strand 2	D	595	600	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	631	633	first strand
Strand 2	D	641	643	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	725	730	first strand
Strand 2	D	733	738	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	817	818	first strand
Strand 2	D	874	875	parallel
Strand 3	D	893	895	parallel
Strand 4	D	886	888	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	16	first strand
Strand 2	E	2	6	anti-parallel
Strand 3	E	66	71	parallel
Strand 4	E	41	45	anti-parallel
Strand 5	E	48	50	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	26	27	first strand
Strand 2	F	34	39	anti-parallel
Strand 3	F	51	56	anti-parallel
Strand 4	F	67	70	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	566	571	first strand
Strand 2	G	595	600	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	631	633	first strand
Strand 2	G	641	643	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	725	730	first strand
Strand 2	G	733	738	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	816	818	first strand
Strand 2	G	873	876	parallel
Strand 3	G	893	895	parallel
Strand 4	G	886	888	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	16	first strand
Strand 2	H	2	6	anti-parallel
Strand 3	H	66	71	parallel
Strand 4	H	41	45	anti-parallel
Strand 5	H	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5HPT

Analysis of interatomic Contacts of Structural Units in PDB entry:
5HPT