Analysis of interatomic Contacts of Structural Units in PDB entry:
5HPY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HPY entry

There are 4 chains in PDB entry 5HPY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 196LEU 398
B
 ALA 3GLN 180
D
 PHE 198LEU 398
F
 ALA 3GLN 180
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5HPY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
213 227Right-handed alpha
Helix 2
AA2
A
239 253Right-handed alpha
Helix 3
AA3
A
258 262Right-handed 310
Helix 4
AA4
A
263 278Right-handed alpha
Helix 5
AA5
A
287 297Right-handed alpha
Helix 6
AA6
A
299 312Right-handed alpha
Helix 7
AA7
A
315 335Right-handed alpha
Helix 8
AA8
A
335 340Right-handed alpha
Helix 9
AA9
A
342 355Right-handed alpha
Helix 10
AB1
A
365 396Right-handed alpha
Helix 11
AB2
B
17 28Right-handed alpha
Helix 12
AB3
B
63 67Right-handed 310
Helix 13
AB4
B
69 74Right-handed 310
Helix 14
AB5
B
88 98Right-handed alpha
Helix 15
AB6
B
98 107Right-handed alpha
Helix 16
AB7
B
118 122Right-handed 310
Helix 17
AB8
B
124 134Right-handed alpha
Helix 18
AB9
B
140 152Right-handed alpha
Helix 19
AC1
B
166 180Right-handed alpha
Helix 20
AC2
D
213 227Right-handed alpha
Helix 21
AC3
D
239 253Right-handed alpha
Helix 22
AC4
D
258 262Right-handed 310
Helix 23
AC5
D
263 277Right-handed alpha
Helix 24
AC6
D
287 295Right-handed alpha
Helix 25
AC7
D
299 312Right-handed alpha
Helix 26
AC8
D
315 335Right-handed alpha
Helix 27
AC9
D
335 340Right-handed alpha
Helix 28
AD1
D
342 355Right-handed alpha
Helix 29
AD2
D
362 396Right-handed alpha
Helix 30
AD3
F
17 27Right-handed alpha
Helix 31
AD4
F
63 67Right-handed 310
Helix 32
AD5
F
69 74Right-handed 310
Helix 33
AD6
F
88 98Right-handed alpha
Helix 34
AD7
F
98 107Right-handed alpha
Helix 35
AD8
F
118 122Right-handed 310
Helix 36
AD9
F
124 133Right-handed alpha
Helix 37
AE1
F
140 152Right-handed alpha
Helix 38
AE2
F
166 180Right-handed alpha
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There are 2 sheets in PDB entry 5HPY. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 48first strand
Strand 2
B
51 60anti-parallel
Strand 3
B
4 12parallel
Strand 4
B
79 85parallel
Strand 5
B
112 117parallel
Strand 6
B
155 158parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
39 48first strand
Strand 2
F
51 60anti-parallel
Strand 3
F
4 12parallel
Strand 4
F
79 85parallel
Strand 5
F
112 117parallel
Strand 6
F
155 158parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il