Analysis of interatomic Contacts of Structural Units in PDB entry:
5HQ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HQ8 entry

There are 4 chains in PDB entry 5HQ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 3SER 428
B
 PRO 3ALA 427
I
 TYR 250TYR 264
J
 GLU 256TYR 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 5HQ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 45Right-handed 310
Helix 2
AA2
A
72 94Right-handed alpha
Helix 3
AA3
A
99 112Right-handed alpha
Helix 4
AA4
A
118 122Right-handed 310
Helix 5
AA5
A
125 129Right-handed 310
Helix 6
AA6
A
132 136Right-handed 310
Helix 7
AA7
A
137 155Right-handed alpha
Helix 8
AA8
A
161 165Right-handed 310
Helix 9
AA9
A
170 182Right-handed alpha
Helix 10
AB1
A
200 204Right-handed 310
Helix 11
AB2
A
245 258Right-handed alpha
Helix 12
AB3
A
263 269Right-handed alpha
Helix 13
AB4
A
271 276Right-handed alpha
Helix 14
AB5
A
279 299Right-handed alpha
Helix 15
AB6
A
301 316Right-handed alpha
Helix 16
AB7
A
324 342Right-handed alpha
Helix 17
AB8
A
343 354Right-handed alpha
Helix 18
AB9
A
354 362Right-handed alpha
Helix 19
AC1
A
366 383Right-handed alpha
Helix 20
AC2
A
385 404Right-handed alpha
Helix 21
AC3
A
409 428Right-handed alpha
Helix 22
AC4
B
42 45Right-handed 310
Helix 23
AC5
B
72 84Right-handed alpha
Helix 24
AC6
B
86 94Right-handed alpha
Helix 25
AC7
B
99 112Right-handed alpha
Helix 26
AC8
B
118 122Right-handed 310
Helix 27
AC9
B
125 129Right-handed 310
Helix 28
AD1
B
132 136Right-handed 310
Helix 29
AD2
B
137 155Right-handed alpha
Helix 30
AD3
B
161 165Right-handed 310
Helix 31
AD4
B
170 182Right-handed alpha
Helix 32
AD5
B
200 204Right-handed 310
Helix 33
AD6
B
245 258Right-handed alpha
Helix 34
AD7
B
263 269Right-handed alpha
Helix 35
AD8
B
271 276Right-handed alpha
Helix 36
AD9
B
279 299Right-handed alpha
Helix 37
AE1
B
301 316Right-handed alpha
Helix 38
AE2
B
324 342Right-handed alpha
Helix 39
AE3
B
343 353Right-handed alpha
Helix 40
AE4
B
354 362Right-handed alpha
Helix 41
AE5
B
366 383Right-handed alpha
Helix 42
AE6
B
385 404Right-handed alpha
Helix 43
AE7
B
408 427Right-handed alpha
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There are 9 sheets in PDB entry 5HQ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
16 20anti-parallel
Strand 3
A
234 237anti-parallel
Strand 4
A
205 206parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
220 225anti-parallel
Strand 3
A
212 217anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
192 197anti-parallel
Strand 3
A
183 186anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
69 70anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 10first strand
Strand 2
B
16 20anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 33first strand
Strand 2
B
220 225anti-parallel
Strand 3
B
212 217anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 40first strand
Strand 2
B
192 197anti-parallel
Strand 3
B
183 186anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 61first strand
Strand 2
B
69 70anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 206first strand
Strand 2
B
236 237parallel
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