Analysis of interatomic Contacts of Structural Units in PDB entry:
5HQJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HQJ entry

There is 1 chain in PDB entry 5HQJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 25LYS 313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 5HQJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 30Right-handed 310
Helix 2
AA2
A
43 59Right-handed alpha
Helix 3
AA3
A
72 85Right-handed alpha
Helix 4
AA4
A
97 99Right-handed 310
Helix 5
AA5
A
100 109Right-handed alpha
Helix 6
AA6
A
133 149Right-handed alpha
Helix 7
AA7
A
164 179Right-handed alpha
Helix 8
AA8
A
195 210Right-handed alpha
Helix 9
AA9
A
222 232Right-handed alpha
Helix 10
AB1
A
236 240Right-handed 310
Helix 11
AB2
A
251 260Right-handed alpha
Helix 12
AB3
A
270 287Right-handed alpha
Helix 13
AB4
A
304 308Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 5HQJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 64first strand
Strand 2
A
32 36parallel
Strand 3
A
89 92parallel
Strand 4
A
113 117parallel
Strand 5
A
129 131parallel
Strand 6
A
296 297parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 190first strand
Strand 2
A
152 158parallel
Strand 3
A
213 218parallel
Strand 4
A
244 248parallel
Strand 5
A
265 268parallel
Strand 6
A
301 303anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il