Analysis of interatomic Contacts of Structural Units in PDB entry:
5HQL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5HQL entry

There are 4 chains in PDB entry 5HQL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 191
A	ASN 193	LEU 456
B	MET 1	ILE 191
B	ASN 193	ALA 211

There are160 helices in PDB entry 5HQL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	8	Right-handed alpha
Helix 2	AA2	A	13	21	Right-handed alpha
Helix 3	AA3	A	38	49	Right-handed alpha
Helix 4	AA4	A	62	68	Right-handed alpha
Helix 5	AA5	A	77	79	Right-handed 310
Helix 6	AA6	A	89	91	Right-handed 310
Helix 7	AA7	A	101	110	Right-handed alpha
Helix 8	AA8	A	111	115	Right-handed 310
Helix 9	AA9	A	130	135	Right-handed alpha
Helix 10	AB1	A	143	152	Right-handed alpha
Helix 11	AB2	A	173	186	Right-handed alpha
Helix 12	AB3	A	204	224	Right-handed alpha
Helix 13	AB4	A	237	253	Right-handed alpha
Helix 14	AB5	A	254	257	Right-handed 310
Helix 15	AB6	A	265	269	Right-handed alpha
Helix 16	AB7	A	269	280	Right-handed alpha
Helix 17	AB8	A	292	297	Right-handed alpha
Helix 18	AB9	A	305	317	Right-handed alpha
Helix 19	AC1	A	334	336	Right-handed 310
Helix 20	AC2	A	337	346	Right-handed alpha
Helix 21	AC3	A	376	385	Right-handed alpha
Helix 22	AC4	A	393	399	Right-handed alpha
Helix 23	AC5	A	403	421	Right-handed alpha
Helix 24	AC6	A	423	429	Right-handed alpha
Helix 25	AC7	A	431	441	Right-handed alpha
Helix 26	AC8	A	441	449	Right-handed alpha
Helix 27	AC9	A	451	456	Right-handed alpha
Helix 28	AD1	B	3	8	Right-handed alpha
Helix 29	AD2	B	13	21	Right-handed alpha
Helix 30	AD3	B	38	49	Right-handed alpha
Helix 31	AD4	B	62	68	Right-handed alpha
Helix 32	AD5	B	77	79	Right-handed 310
Helix 33	AD6	B	89	91	Right-handed 310
Helix 34	AD7	B	101	110	Right-handed alpha
Helix 35	AD8	B	111	115	Right-handed 310
Helix 36	AD9	B	130	135	Right-handed alpha
Helix 37	AE1	B	143	152	Right-handed alpha
Helix 38	AE2	B	173	186	Right-handed alpha
Helix 39	AE3	B	204	224	Right-handed alpha
Helix 40	AE4	B	237	253	Right-handed alpha
Helix 41	AE5	B	254	257	Right-handed 310
Helix 42	AE6	B	265	269	Right-handed alpha
Helix 43	AE7	B	269	280	Right-handed alpha
Helix 44	AE8	B	292	297	Right-handed alpha
Helix 45	AE9	B	305	317	Right-handed alpha
Helix 46	AF1	B	334	336	Right-handed 310
Helix 47	AF2	B	337	346	Right-handed alpha
Helix 48	AF3	B	376	385	Right-handed alpha
Helix 49	AF4	B	393	399	Right-handed alpha
Helix 50	AF5	B	403	421	Right-handed alpha
Helix 51	AF6	B	423	429	Right-handed alpha
Helix 52	AF7	B	431	441	Right-handed alpha
Helix 53	AF8	B	441	449	Right-handed alpha
Helix 54	AF9	B	451	456	Right-handed alpha
Helix 55	AG1	C	3	8	Right-handed alpha
Helix 56	AG2	C	13	21	Right-handed alpha
Helix 57	AG3	C	38	49	Right-handed alpha
Helix 58	AG4	C	62	68	Right-handed alpha
Helix 59	AG5	C	77	79	Right-handed 310
Helix 60	AG6	C	89	91	Right-handed 310
Helix 61	AG7	C	101	110	Right-handed alpha
Helix 62	AG8	C	111	115	Right-handed 310
Helix 63	AG9	C	130	135	Right-handed alpha
Helix 64	AH1	C	143	152	Right-handed alpha
Helix 65	AH2	C	173	186	Right-handed alpha
Helix 66	AH3	C	204	224	Right-handed alpha
Helix 67	AH4	C	237	253	Right-handed alpha
Helix 68	AH5	C	254	257	Right-handed 310
Helix 69	AH6	C	265	269	Right-handed alpha
Helix 70	AH7	C	269	280	Right-handed alpha
Helix 71	AH8	C	292	297	Right-handed alpha
Helix 72	AH9	C	305	317	Right-handed alpha
Helix 73	AI1	C	334	336	Right-handed 310
Helix 74	AI2	C	337	346	Right-handed alpha
Helix 75	AI3	C	376	385	Right-handed alpha
Helix 76	AI4	C	393	399	Right-handed alpha
Helix 77	AI5	C	403	421	Right-handed alpha
Helix 78	AI6	C	423	429	Right-handed alpha
Helix 79	AI7	C	431	441	Right-handed alpha
Helix 80	AI8	C	441	449	Right-handed alpha
Helix 81	AI9	C	451	456	Right-handed alpha
Helix 82	AJ1	D	3	8	Right-handed alpha
Helix 83	AJ2	D	13	21	Right-handed alpha
Helix 84	AJ3	D	38	49	Right-handed alpha
Helix 85	AJ4	D	62	68	Right-handed alpha
Helix 86	AJ5	D	77	79	Right-handed 310
Helix 87	AJ6	D	89	91	Right-handed 310
Helix 88	AJ7	D	101	110	Right-handed alpha
Helix 89	AJ8	D	111	115	Right-handed 310
Helix 90	AJ9	D	130	135	Right-handed alpha
Helix 91	AK1	D	143	152	Right-handed alpha
Helix 92	AK2	D	173	186	Right-handed alpha
Helix 93	AK3	D	204	224	Right-handed alpha
Helix 94	AK4	D	237	253	Right-handed alpha
Helix 95	AK5	D	254	257	Right-handed 310
Helix 96	AK6	D	265	269	Right-handed alpha
Helix 97	AK7	D	269	280	Right-handed alpha
Helix 98	AK8	D	292	297	Right-handed alpha
Helix 99	AK9	D	305	317	Right-handed alpha
Helix 100	AL1	D	334	336	Right-handed 310
Helix 101	AL2	D	337	346	Right-handed alpha
Helix 102	AL3	D	376	385	Right-handed alpha
Helix 103	AL4	D	393	399	Right-handed alpha
Helix 104	AL5	D	403	421	Right-handed alpha
Helix 105	AL6	D	423	429	Right-handed alpha
Helix 106	AL7	D	431	441	Right-handed alpha
Helix 107	AL8	D	441	449	Right-handed alpha
Helix 108	AL9	E	3	8	Right-handed alpha
Helix 109	AM1	E	13	21	Right-handed alpha
Helix 110	AM2	E	38	49	Right-handed alpha
Helix 111	AM3	E	62	68	Right-handed alpha
Helix 112	AM4	E	77	79	Right-handed 310
Helix 113	AM5	E	89	91	Right-handed 310
Helix 114	AM6	E	101	110	Right-handed alpha
Helix 115	AM7	E	111	115	Right-handed 310
Helix 116	AM8	E	130	135	Right-handed alpha
Helix 117	AM9	E	143	152	Right-handed alpha
Helix 118	AN1	E	173	186	Right-handed alpha
Helix 119	AN2	E	204	224	Right-handed alpha
Helix 120	AN3	E	237	253	Right-handed alpha
Helix 121	AN4	E	254	257	Right-handed 310
Helix 122	AN5	E	265	269	Right-handed alpha
Helix 123	AN6	E	269	280	Right-handed alpha
Helix 124	AN7	E	292	297	Right-handed alpha
Helix 125	AN8	E	305	317	Right-handed alpha
Helix 126	AN9	E	334	336	Right-handed 310
Helix 127	AO1	E	337	346	Right-handed alpha
Helix 128	AO2	E	376	385	Right-handed alpha
Helix 129	AO3	E	393	399	Right-handed alpha
Helix 130	AO4	E	403	420	Right-handed alpha
Helix 131	AO5	E	423	429	Right-handed alpha
Helix 132	AO6	E	431	441	Right-handed alpha
Helix 133	AO7	E	441	449	Right-handed alpha
Helix 134	AO8	E	451	456	Right-handed alpha
Helix 135	AO9	F	3	8	Right-handed alpha
Helix 136	AP1	F	13	21	Right-handed alpha
Helix 137	AP2	F	38	49	Right-handed alpha
Helix 138	AP3	F	62	68	Right-handed alpha
Helix 139	AP4	F	77	79	Right-handed 310
Helix 140	AP5	F	89	91	Right-handed 310
Helix 141	AP6	F	101	110	Right-handed alpha
Helix 142	AP7	F	111	115	Right-handed 310
Helix 143	AP8	F	130	135	Right-handed alpha
Helix 144	AP9	F	143	152	Right-handed alpha
Helix 145	AQ1	F	173	186	Right-handed alpha
Helix 146	AQ2	F	204	224	Right-handed alpha
Helix 147	AQ3	F	237	253	Right-handed alpha
Helix 148	AQ4	F	254	257	Right-handed 310
Helix 149	AQ5	F	265	269	Right-handed alpha
Helix 150	AQ6	F	269	280	Right-handed alpha
Helix 151	AQ7	F	292	297	Right-handed alpha
Helix 152	AQ8	F	305	317	Right-handed alpha
Helix 153	AQ9	F	334	336	Right-handed 310
Helix 154	AR1	F	337	346	Right-handed alpha
Helix 155	AR2	F	376	385	Right-handed alpha
Helix 156	AR3	F	393	399	Right-handed alpha
Helix 157	AR4	F	403	421	Right-handed alpha
Helix 158	AR5	F	423	428	Right-handed alpha
Helix 159	AR6	F	431	441	Right-handed alpha
Helix 160	AR7	F	441	449	Right-handed alpha

There are 18 sheets in PDB entry 5HQL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	76	first strand
Strand 2	A	81	87	anti-parallel
Strand 3	A	23	32	anti-parallel
Strand 4	A	119	128	anti-parallel
Strand 5	A	303	304	parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	165	first strand
Strand 2	A	190	192	parallel
Strand 3	A	228	232	parallel
Strand 4	A	259	264	parallel
Strand 5	A	284	288	parallel
Strand 6	A	320	322	parallel
Strand 7	A	365	369	parallel
Strand 8	A	390	392	parallel
Strand 9	A	161	165	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	350	first strand
Strand 2	A	355	357	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	76	first strand
Strand 2	B	81	87	anti-parallel
Strand 3	B	23	32	anti-parallel
Strand 4	B	119	128	anti-parallel
Strand 5	B	303	304	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	165	first strand
Strand 2	B	190	192	parallel
Strand 3	B	228	232	parallel
Strand 4	B	259	264	parallel
Strand 5	B	284	288	parallel
Strand 6	B	320	322	parallel
Strand 7	B	365	369	parallel
Strand 8	B	390	392	parallel
Strand 9	B	161	165	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	350	first strand
Strand 2	B	355	357	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	76	first strand
Strand 2	C	81	87	anti-parallel
Strand 3	C	23	32	anti-parallel
Strand 4	C	119	128	anti-parallel
Strand 5	C	303	304	parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	165	first strand
Strand 2	C	190	192	parallel
Strand 3	C	228	232	parallel
Strand 4	C	259	264	parallel
Strand 5	C	284	288	parallel
Strand 6	C	320	322	parallel
Strand 7	C	365	368	parallel
Strand 8	C	390	392	parallel
Strand 9	C	161	165	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	350	first strand
Strand 2	C	355	357	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	76	first strand
Strand 2	D	81	87	anti-parallel
Strand 3	D	23	32	anti-parallel
Strand 4	D	119	128	anti-parallel
Strand 5	D	303	304	parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	165	first strand
Strand 2	D	190	192	parallel
Strand 3	D	228	232	parallel
Strand 4	D	259	264	parallel
Strand 5	D	284	288	parallel
Strand 6	D	320	322	parallel
Strand 7	D	365	369	parallel
Strand 8	D	390	392	parallel
Strand 9	D	161	165	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	348	350	first strand
Strand 2	D	355	357	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	76	first strand
Strand 2	E	81	87	anti-parallel
Strand 3	E	23	32	anti-parallel
Strand 4	E	119	128	anti-parallel
Strand 5	E	303	304	parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	161	165	first strand
Strand 2	E	190	192	parallel
Strand 3	E	228	232	parallel
Strand 4	E	259	264	parallel
Strand 5	E	284	288	parallel
Strand 6	E	320	322	parallel
Strand 7	E	365	369	parallel
Strand 8	E	390	392	parallel
Strand 9	E	161	165	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	348	350	first strand
Strand 2	E	355	357	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	71	76	first strand
Strand 2	F	81	87	anti-parallel
Strand 3	F	23	32	anti-parallel
Strand 4	F	119	128	anti-parallel
Strand 5	F	303	304	parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	161	165	first strand
Strand 2	F	190	192	parallel
Strand 3	F	228	232	parallel
Strand 4	F	259	264	parallel
Strand 5	F	284	288	parallel
Strand 6	F	320	322	parallel
Strand 7	F	365	369	parallel
Strand 8	F	390	392	parallel
Strand 9	F	161	165	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	348	350	first strand
Strand 2	F	355	357	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5HQL

Analysis of interatomic Contacts of Structural Units in PDB entry:
5HQL