Analysis of interatomic Contacts of Structural Units in PDB entry:
5HQM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HQM entry

There are 4 chains in PDB entry 5HQM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3ILE 191
A
 ASN 193THR 461
B
 MET 1ILE 191
B
 ASN 193ASP 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 5HQM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 21Right-handed alpha
Helix 2
AA2
A
38 50Right-handed alpha
Helix 3
AA3
A
62 67Right-handed alpha
Helix 4
AA4
A
77 79Right-handed 310
Helix 5
AA5
A
89 91Right-handed 310
Helix 6
AA6
A
101 111Right-handed alpha
Helix 7
AA7
A
112 116Right-handed 310
Helix 8
AA8
A
130 135Right-handed alpha
Helix 9
AA9
A
143 152Right-handed alpha
Helix 10
AB1
A
173 186Right-handed alpha
Helix 11
AB2
A
204 224Right-handed alpha
Helix 12
AB3
A
237 253Right-handed alpha
Helix 13
AB4
A
254 257Right-handed 310
Helix 14
AB5
A
265 269Right-handed alpha
Helix 15
AB6
A
269 280Right-handed alpha
Helix 16
AB7
A
292 297Right-handed alpha
Helix 17
AB8
A
305 317Right-handed alpha
Helix 18
AB9
A
334 336Right-handed 310
Helix 19
AC1
A
337 346Right-handed alpha
Helix 20
AC2
A
376 385Right-handed alpha
Helix 21
AC3
A
394 399Right-handed alpha
Helix 22
AC4
A
403 421Right-handed alpha
Helix 23
AC5
A
423 429Right-handed alpha
Helix 24
AC6
A
431 441Right-handed alpha
Helix 25
AC7
A
441 449Right-handed alpha
Helix 26
AC8
A
451 457Right-handed alpha
Helix 27
AC9
B
3 8Right-handed alpha
Helix 28
AD1
B
13 21Right-handed alpha
Helix 29
AD2
B
38 50Right-handed alpha
Helix 30
AD3
B
62 67Right-handed alpha
Helix 31
AD4
B
77 79Right-handed 310
Helix 32
AD5
B
89 91Right-handed 310
Helix 33
AD6
B
101 111Right-handed alpha
Helix 34
AD7
B
112 115Right-handed 310
Helix 35
AD8
B
130 135Right-handed alpha
Helix 36
AD9
B
143 152Right-handed alpha
Helix 37
AE1
B
173 186Right-handed alpha
Helix 38
AE2
B
204 224Right-handed alpha
Helix 39
AE3
B
237 253Right-handed alpha
Helix 40
AE4
B
254 257Right-handed 310
Helix 41
AE5
B
265 269Right-handed alpha
Helix 42
AE6
B
269 280Right-handed alpha
Helix 43
AE7
B
292 297Right-handed alpha
Helix 44
AE8
B
305 317Right-handed alpha
Helix 45
AE9
B
334 336Right-handed 310
Helix 46
AF1
B
337 346Right-handed alpha
Helix 47
AF2
B
376 385Right-handed alpha
Helix 48
AF3
B
394 399Right-handed alpha
Helix 49
AF4
B
403 421Right-handed alpha
Helix 50
AF5
B
423 429Right-handed alpha
Helix 51
AF6
B
431 441Right-handed alpha
Helix 52
AF7
B
441 449Right-handed alpha
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There are 6 sheets in PDB entry 5HQM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 76first strand
Strand 2
A
81 87anti-parallel
Strand 3
A
23 32anti-parallel
Strand 4
A
119 128anti-parallel
Strand 5
A
303 304parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 165first strand
Strand 2
A
190 192parallel
Strand 3
A
228 232parallel
Strand 4
A
259 264parallel
Strand 5
A
284 288parallel
Strand 6
A
320 322parallel
Strand 7
A
365 369parallel
Strand 8
A
390 392parallel
Strand 9
A
161 165parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 350first strand
Strand 2
A
355 357anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 76first strand
Strand 2
B
81 87anti-parallel
Strand 3
B
23 32anti-parallel
Strand 4
B
119 128anti-parallel
Strand 5
B
303 304parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 165first strand
Strand 2
B
190 192parallel
Strand 3
B
228 232parallel
Strand 4
B
259 264parallel
Strand 5
B
284 288parallel
Strand 6
B
320 322parallel
Strand 7
B
365 369parallel
Strand 8
B
390 392parallel
Strand 9
B
161 165parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 350first strand
Strand 2
B
355 357anti-parallel
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