Analysis of interatomic Contacts of Structural Units in PDB entry:
5HQN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HQN entry

There are 2 chains in PDB entry 5HQN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 167LEU 608
B
 ASP 167LEU 608
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5HQN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
234 238Right-handed 310
Helix 2
AA2
A
251 261Right-handed alpha
Helix 3
AA3
A
262 266Right-handed 310
Helix 4
AA4
A
286 306Right-handed alpha
Helix 5
AA5
A
336 348Right-handed alpha
Helix 6
AA6
A
352 363Right-handed alpha
Helix 7
AA7
A
379 383Right-handed 310
Helix 8
AA8
A
387 392Right-handed 310
Helix 9
AA9
A
396 398Right-handed 310
Helix 10
AB1
A
399 415Right-handed alpha
Helix 11
AB2
A
425 429Right-handed 310
Helix 12
AB3
A
430 444Right-handed alpha
Helix 13
AB4
A
518 523Right-handed alpha
Helix 14
AB5
A
537 542Right-handed alpha
Helix 15
AB6
A
547 561Right-handed alpha
Helix 16
AB7
A
561 573Right-handed alpha
Helix 17
AB8
A
583 596Right-handed alpha
Helix 18
AB9
A
601 606Right-handed 310
Helix 19
AC1
B
226 230Right-handed 310
Helix 20
AC2
B
234 238Right-handed 310
Helix 21
AC3
B
251 261Right-handed alpha
Helix 22
AC4
B
262 266Right-handed 310
Helix 23
AC5
B
281 285Right-handed 310
Helix 24
AC6
B
286 306Right-handed alpha
Helix 25
AC7
B
336 347Right-handed alpha
Helix 26
AC8
B
352 363Right-handed alpha
Helix 27
AC9
B
379 384Right-handed 310
Helix 28
AD1
B
387 392Right-handed 310
Helix 29
AD2
B
396 398Right-handed 310
Helix 30
AD3
B
399 415Right-handed alpha
Helix 31
AD4
B
425 429Right-handed 310
Helix 32
AD5
B
430 444Right-handed alpha
Helix 33
AD6
B
518 523Right-handed alpha
Helix 34
AD7
B
537 542Right-handed alpha
Helix 35
AD8
B
547 561Right-handed alpha
Helix 36
AD9
B
561 573Right-handed alpha
Helix 37
AE1
B
583 594Right-handed alpha
Helix 38
AE2
B
601 606Right-handed 310
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There are 4 sheets in PDB entry 5HQN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 313first strand
Strand 2
A
270 274parallel
Strand 3
A
196 202parallel
Strand 4
A
492 499anti-parallel
Strand 5
A
509 516anti-parallel
Strand 6
A
532 536anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 367first strand
Strand 2
A
373 377anti-parallel
Strand 3
A
417 421parallel
Strand 4
A
448 453parallel
Strand 5
A
473 479parallel
Strand 6
A
460 465anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
310 312first strand
Strand 2
B
270 273parallel
Strand 3
B
196 202parallel
Strand 4
B
492 499anti-parallel
Strand 5
B
509 516anti-parallel
Strand 6
B
532 536anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
365 370first strand
Strand 2
B
373 377anti-parallel
Strand 3
B
417 421parallel
Strand 4
B
448 453parallel
Strand 5
B
473 479parallel
Strand 6
B
460 465anti-parallel
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