Analysis of interatomic Contacts of Structural Units in PDB entry:
5HQP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HQP entry

There are 4 chains in PDB entry 5HQP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 76ILE 256
B
 LEU 76LYS 250
C
 GLU 1PHE 331
D
 ILE 2VAL 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5HQP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
104 107Right-handed 310
Helix 2
AA2
A
125 134Right-handed alpha
Helix 3
AA3
A
134 141Right-handed alpha
Helix 4
AA4
A
152 162Right-handed alpha
Helix 5
AA5
A
163 167Right-handed 310
Helix 6
AA6
A
182 188Right-handed alpha
Helix 7
AA7
A
224 241Right-handed alpha
Helix 8
AA8
B
104 107Right-handed 310
Helix 9
AA9
B
125 134Right-handed alpha
Helix 10
AB1
B
134 141Right-handed alpha
Helix 11
AB2
B
152 162Right-handed alpha
Helix 12
AB3
B
163 167Right-handed 310
Helix 13
AB4
B
182 188Right-handed alpha
Helix 14
AB5
B
224 241Right-handed alpha
Helix 15
AB6
C
9 17Right-handed alpha
Helix 16
AB7
C
29 49Right-handed alpha
Helix 17
AB8
C
66 73Right-handed alpha
Helix 18
AB9
C
99 112Right-handed alpha
Helix 19
AC1
C
143 157Right-handed alpha
Helix 20
AC2
C
200 213Right-handed alpha
Helix 21
AC3
C
220 229Right-handed alpha
Helix 22
AC4
C
244 257Right-handed alpha
Helix 23
AC5
C
258 262Right-handed 310
Helix 24
AC6
C
275 281Right-handed alpha
Helix 25
AC7
C
305 311Right-handed 310
Helix 26
AC8
C
313 324Right-handed alpha
Helix 27
AC9
D
9 17Right-handed alpha
Helix 28
AD1
D
29 50Right-handed alpha
Helix 29
AD2
D
66 73Right-handed alpha
Helix 30
AD3
D
99 110Right-handed alpha
Helix 31
AD4
D
122 127Right-handed alpha
Helix 32
AD5
D
143 156Right-handed alpha
Helix 33
AD6
D
201 212Right-handed alpha
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There are 10 sheets in PDB entry 5HQP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 102first strand
Strand 2
A
89 94anti-parallel
Strand 3
A
176 178anti-parallel
Strand 4
A
143 149parallel
Strand 5
A
110 115parallel
Strand 6
A
200 205anti-parallel
Strand 7
A
211 217anti-parallel
Strand 8
B
211 217anti-parallel
Strand 9
B
200 205anti-parallel
Strand 10
B
110 115anti-parallel
Strand 11
B
143 149parallel
Strand 12
B
176 178parallel
Strand 13
B
89 94anti-parallel
Strand 14
B
97 102anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
197 198anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 246first strand
Strand 2
C
77 78anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 192first strand
Strand 2
B
197 198anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 246first strand
Strand 2
D
77 78anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 4first strand
Strand 2
C
56 62parallel
Strand 3
C
19 25parallel
Strand 4
C
80 84anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
116 117first strand
Strand 2
C
161 165parallel
Strand 3
C
133 137parallel
Strand 4
C
179 183anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
216 219first strand
Strand 2
C
266 271parallel
Strand 3
C
234 239parallel
Strand 4
C
291 295anti-parallel
Strand 5
C
300 302anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 62first strand
Strand 2
D
19 25parallel
Strand 3
D
80 85anti-parallel
Strand 4
D
88 89anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
116 117first strand
Strand 2
D
161 164parallel
Strand 3
D
133 137parallel
Strand 4
D
179 183anti-parallel
Strand 5
D
193 194anti-parallel
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