Analysis of interatomic Contacts of Structural Units in PDB entry:
5HQW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HQW entry

There are 2 chains in PDB entry 5HQW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2214GLU 2500
B
 PRO 2214THR 2495
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5HQW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2241 2246Right-handed alpha
Helix 2
AA2
A
2256 2272Right-handed alpha
Helix 3
AA3
A
2276 2280Right-handed 310
Helix 4
AA4
A
2322 2326Right-handed 310
Helix 5
AA5
A
2349 2356Right-handed alpha
Helix 6
AA6
A
2364 2375Right-handed alpha
Helix 7
AA7
A
2380 2383Right-handed 310
Helix 8
AA8
A
2402 2412Right-handed 310
Helix 9
AA9
A
2415 2425Right-handed alpha
Helix 10
AB1
A
2426 2431Right-handed alpha
Helix 11
AB2
A
2452 2456Right-handed 310
Helix 12
AB3
B
2241 2246Right-handed alpha
Helix 13
AB4
B
2256 2272Right-handed alpha
Helix 14
AB5
B
2349 2356Right-handed alpha
Helix 15
AB6
B
2364 2374Right-handed alpha
Helix 16
AB7
B
2380 2383Right-handed 310
Helix 17
AB8
B
2402 2412Right-handed 310
Helix 18
AB9
B
2415 2427Right-handed alpha
Helix 19
AC1
B
2452 2456Right-handed 310
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There are 4 sheets in PDB entry 5HQW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2223 2224first strand
Strand 2
A
2231 2237anti-parallel
Strand 3
A
2300 2308anti-parallel
Strand 4
A
2314 2320anti-parallel
Strand 5
A
2330 2339anti-parallel
Strand 6
A
2282 2289anti-parallel
Strand 7
A
2439 2449anti-parallel
Strand 8
A
2487 2498anti-parallel
Strand 9
A
2473 2481anti-parallel
Strand 10
A
2458 2463anti-parallel
Strand 11
A
2394 2399anti-parallel
Strand 12
A
2385 2391anti-parallel
Strand 13
A
2360 2363anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2294 2295first strand
Strand 2
A
2252 2254anti-parallel
Strand 3
A
2247 2249anti-parallel
Strand 4
A
2376 2378anti-parallel
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There are 13 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2223 2224first strand
Strand 2
B
2231 2237anti-parallel
Strand 3
B
2300 2308anti-parallel
Strand 4
B
2314 2320anti-parallel
Strand 5
B
2330 2339anti-parallel
Strand 6
B
2282 2289anti-parallel
Strand 7
B
2443 2449anti-parallel
Strand 8
B
2487 2494anti-parallel
Strand 9
B
2476 2481anti-parallel
Strand 10
B
2458 2463anti-parallel
Strand 11
B
2394 2399anti-parallel
Strand 12
B
2385 2390anti-parallel
Strand 13
B
2359 2363anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2294 2295first strand
Strand 2
B
2252 2254anti-parallel
Strand 3
B
2247 2249anti-parallel
Strand 4
B
2376 2378anti-parallel
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