Analysis of interatomic Contacts of Structural Units in PDB entry:
5HR4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5HR4 entry

There are 6 chains in PDB entry 5HR4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	PRO 157	LEU 905
H	T 1	C 13
I	G 17	A 29
J	LYS 156	LEU 906
K	T 1	C 13
L	T 18	A 29

There are 79 helices in PDB entry 5HR4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	162	179	Right-handed alpha
Helix 2	AA2	C	182	201	Right-handed alpha
Helix 3	AA3	C	208	218	Right-handed alpha
Helix 4	AA4	C	224	236	Right-handed alpha
Helix 5	AA5	C	237	238	Right-handed 310
Helix 6	AA6	C	239	243	Right-handed 310
Helix 7	AA7	C	248	253	Right-handed alpha
Helix 8	AA8	C	258	263	Right-handed alpha
Helix 9	AA9	C	272	284	Right-handed alpha
Helix 10	AB1	C	291	302	Right-handed alpha
Helix 11	AB2	C	304	311	Right-handed alpha
Helix 12	AB3	C	317	329	Right-handed alpha
Helix 13	AB4	C	329	341	Right-handed alpha
Helix 14	AB5	C	343	356	Right-handed alpha
Helix 15	AB6	C	367	389	Right-handed alpha
Helix 16	AB7	C	397	402	Right-handed alpha
Helix 17	AB8	C	405	407	Right-handed 310
Helix 18	AB9	C	415	441	Right-handed alpha
Helix 19	AC1	C	465	469	Right-handed 310
Helix 20	AC2	C	471	475	Right-handed 310
Helix 21	AC3	C	491	503	Right-handed alpha
Helix 22	AC4	C	507	511	Right-handed 310
Helix 23	AC5	C	512	515	Right-handed 310
Helix 24	AC6	C	516	525	Right-handed alpha
Helix 25	AC7	C	526	528	Right-handed 310
Helix 26	AC8	C	540	542	Right-handed 310
Helix 27	AC9	C	543	557	Right-handed alpha
Helix 28	AD1	C	656	666	Right-handed alpha
Helix 29	AD2	C	667	671	Right-handed 310
Helix 30	AD3	C	678	684	Right-handed alpha
Helix 31	AD4	C	697	704	Right-handed alpha
Helix 32	AD5	C	704	720	Right-handed alpha
Helix 33	AD6	C	723	730	Right-handed alpha
Helix 34	AD7	C	782	791	Right-handed alpha
Helix 35	AD8	C	791	802	Right-handed alpha
Helix 36	AD9	C	816	820	Right-handed 310
Helix 37	AE1	C	826	846	Right-handed alpha
Helix 38	AE2	C	851	857	Right-handed alpha
Helix 39	AE3	C	862	881	Right-handed alpha
Helix 40	AE4	C	887	904	Right-handed alpha
Helix 41	AE5	J	162	180	Right-handed alpha
Helix 42	AE6	J	183	202	Right-handed alpha
Helix 43	AE7	J	208	218	Right-handed alpha
Helix 44	AE8	J	224	237	Right-handed alpha
Helix 45	AE9	J	238	243	Right-handed 310
Helix 46	AF1	J	248	253	Right-handed alpha
Helix 47	AF2	J	258	263	Right-handed alpha
Helix 48	AF3	J	272	284	Right-handed alpha
Helix 49	AF4	J	291	301	Right-handed alpha
Helix 50	AF5	J	304	311	Right-handed alpha
Helix 51	AF6	J	317	329	Right-handed alpha
Helix 52	AF7	J	329	341	Right-handed alpha
Helix 53	AF8	J	343	356	Right-handed alpha
Helix 54	AF9	J	367	389	Right-handed alpha
Helix 55	AG1	J	397	402	Right-handed alpha
Helix 56	AG2	J	405	407	Right-handed 310
Helix 57	AG3	J	415	442	Right-handed alpha
Helix 58	AG4	J	465	469	Right-handed 310
Helix 59	AG5	J	471	475	Right-handed 310
Helix 60	AG6	J	491	503	Right-handed alpha
Helix 61	AG7	J	507	511	Right-handed 310
Helix 62	AG8	J	512	515	Right-handed 310
Helix 63	AG9	J	516	526	Right-handed alpha
Helix 64	AH1	J	540	545	Right-handed 310
Helix 65	AH2	J	546	557	Right-handed alpha
Helix 66	AH3	J	655	666	Right-handed alpha
Helix 67	AH4	J	667	671	Right-handed 310
Helix 68	AH5	J	678	684	Right-handed alpha
Helix 69	AH6	J	697	703	Right-handed alpha
Helix 70	AH7	J	704	720	Right-handed alpha
Helix 71	AH8	J	723	730	Right-handed alpha
Helix 72	AH9	J	782	791	Right-handed alpha
Helix 73	AI1	J	791	802	Right-handed alpha
Helix 74	AI2	J	816	820	Right-handed 310
Helix 75	AI3	J	826	846	Right-handed alpha
Helix 76	AI4	J	851	856	Right-handed alpha
Helix 77	AI5	J	857	861	Right-handed 310
Helix 78	AI6	J	862	881	Right-handed alpha
Helix 79	AI7	J	887	905	Right-handed alpha

There are 8 sheets in PDB entry 5HR4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	455	458	first strand
Strand 2	C	409	413	parallel
Strand 3	C	359	361	parallel
Strand 4	C	477	480	parallel
Strand 5	C	532	538	parallel
Strand 6	C	581	588	anti-parallel
Strand 7	C	560	569	anti-parallel
Strand 8	C	595	599	parallel
Strand 9	C	608	612	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	641	642	first strand
Strand 2	C	775	779	anti-parallel
Strand 3	C	746	750	anti-parallel
Strand 4	C	763	765	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	653	655	first strand
Strand 2	C	688	691	anti-parallel
Strand 3	C	673	677	anti-parallel
Strand 4	C	770	771	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	752	753	first strand
Strand 2	C	808	810	anti-parallel
Strand 3	C	803	805	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	455	458	first strand
Strand 2	J	409	413	parallel
Strand 3	J	359	362	parallel
Strand 4	J	477	480	parallel
Strand 5	J	532	538	parallel
Strand 6	J	581	588	anti-parallel
Strand 7	J	560	569	anti-parallel
Strand 8	J	595	599	parallel
Strand 9	J	608	612	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	641	642	first strand
Strand 2	J	775	779	anti-parallel
Strand 3	J	746	750	anti-parallel
Strand 4	J	763	765	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	653	654	first strand
Strand 2	J	689	691	anti-parallel
Strand 3	J	673	677	anti-parallel
Strand 4	J	770	771	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	752	753	first strand
Strand 2	J	808	810	anti-parallel
Strand 3	J	803	805	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5HR4

Analysis of interatomic Contacts of Structural Units in PDB entry:
5HR4