Analysis of interatomic Contacts of Structural Units in PDB entry:
5HR5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HR5 entry

There are 2 chains in PDB entry 5HR5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 28ARG 257
A
 GLY 259THR 451
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 5HR5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 35Right-handed alpha
Helix 2
AA2
A
51 66Right-handed alpha
Helix 3
AA3
A
75 84Right-handed alpha
Helix 4
AA4
A
88 93Right-handed 310
Helix 5
AA5
A
96 120Right-handed alpha
Helix 6
AA6
A
134 148Right-handed alpha
Helix 7
AA7
A
161 173Right-handed alpha
Helix 8
AA8
A
183 202Right-handed alpha
Helix 9
AA9
A
233 244Right-handed alpha
Helix 10
AB1
A
261 267Right-handed alpha
Helix 11
AB2
A
276 294Right-handed alpha
Helix 12
AB3
A
305 314Right-handed alpha
Helix 13
AB4
A
323 326Right-handed 310
Helix 14
AB5
A
330 334Right-handed 310
Helix 15
AB6
A
337 345Right-handed alpha
Helix 16
AB7
A
345 355Right-handed alpha
Helix 17
AB8
A
366 384Right-handed alpha
Helix 18
AB9
A
392 405Right-handed alpha
Helix 19
AC1
A
410 414Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 5HR5. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 74first strand
Strand 2
A
125 129parallel
Strand 3
A
40 45parallel
Strand 4
A
151 158parallel
Strand 5
A
216 220parallel
Strand 6
A
225 229anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 321first strand
Strand 2
A
299 302parallel
Strand 3
A
387 391parallel
Strand 4
A
253 257parallel
Strand 5
A
420 427anti-parallel
Strand 6
A
430 437anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il