Analysis of interatomic Contacts of Structural Units in PDB entry:
5HRA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HRA entry

There are 2 chains in PDB entry 5HRA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 233
B
 MET 1GLU 232
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 5HRA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 31Right-handed alpha
Helix 2
AA2
A
44 55Right-handed alpha
Helix 3
AA3
A
56 75Right-handed alpha
Helix 4
AA4
A
84 88Right-handed 310
Helix 5
AA5
A
89 97Right-handed alpha
Helix 6
AA6
A
103 115Right-handed alpha
Helix 7
AA7
A
125 131Right-handed alpha
Helix 8
AA8
A
132 143Right-handed alpha
Helix 9
AA9
A
150 164Right-handed alpha
Helix 10
AB1
A
165 168Right-handed 310
Helix 11
AB2
A
171 187Right-handed alpha
Helix 12
AB3
A
199 204Right-handed alpha
Helix 13
AB4
A
205 209Right-handed 310
Helix 14
AB5
A
216 230Right-handed alpha
Helix 15
AB6
B
11 31Right-handed alpha
Helix 16
AB7
B
44 55Right-handed alpha
Helix 17
AB8
B
56 75Right-handed alpha
Helix 18
AB9
B
84 88Right-handed 310
Helix 19
AC1
B
89 97Right-handed alpha
Helix 20
AC2
B
103 115Right-handed alpha
Helix 21
AC3
B
125 131Right-handed alpha
Helix 22
AC4
B
132 143Right-handed alpha
Helix 23
AC5
B
150 164Right-handed alpha
Helix 24
AC6
B
165 168Right-handed 310
Helix 25
AC7
B
171 188Right-handed alpha
Helix 26
AC8
B
199 204Right-handed alpha
Helix 27
AC9
B
205 209Right-handed 310
Helix 28
AD1
B
216 230Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 5HRA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 81first strand
Strand 2
A
4 8parallel
Strand 3
A
38 42parallel
Strand 4
B
38 42anti-parallel
Strand 5
B
4 8parallel
Strand 6
B
78 81parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
119 123parallel
Strand 3
A
193 195parallel
Strand 4
A
213 215parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 147first strand
Strand 2
B
119 123parallel
Strand 3
B
193 195parallel
Strand 4
B
213 215parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il