Analysis of interatomic Contacts of Structural Units in PDB entry:
5HRT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HRT entry

There are 6 chains in PDB entry 5HRT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 52ILE 858
B
 C 2001 A 2006
B
 G 2008 G 2008
B
 A 2010 C 2013
B
 A 2016 T 2018
B
 T 2021 C 2031
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5HRT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
78 83Right-handed alpha
Helix 2
AA2
A
88 94Right-handed alpha
Helix 3
AA3
A
103 107Right-handed 310
Helix 4
AA4
A
122 127Right-handed alpha
Helix 5
AA5
A
132 139Right-handed alpha
Helix 6
AA6
A
142 146Right-handed 310
Helix 7
AA7
A
174 179Right-handed 310
Helix 8
AA8
A
180 185Right-handed alpha
Helix 9
AA9
A
185 195Right-handed alpha
Helix 10
AB1
A
208 219Right-handed alpha
Helix 11
AB2
A
221 226Right-handed alpha
Helix 12
AB3
A
246 254Right-handed 310
Helix 13
AB4
A
258 266Right-handed alpha
Helix 14
AB5
A
280 293Right-handed alpha
Helix 15
AB6
A
311 318Right-handed alpha
Helix 16
AB7
A
321 323Right-handed 310
Helix 17
AB8
A
324 345Right-handed alpha
Helix 18
AB9
A
373 375Right-handed 310
Helix 19
AC1
A
378 380Right-handed 310
Helix 20
AC2
A
403 411Right-handed alpha
Helix 21
AC3
A
426 428Right-handed 310
Helix 22
AC4
A
429 433Right-handed 310
Helix 23
AC5
A
480 484Right-handed 310
Helix 24
AC6
A
507 516Right-handed alpha
Helix 25
AC7
A
530 534Right-handed 310
Helix 26
AC8
A
558 562Right-handed 310
Helix 27
AC9
A
587 592Right-handed alpha
Helix 28
AD1
A
641 645Right-handed 310
Helix 29
AD2
A
655 659Right-handed 310
Helix 30
AD3
A
661 668Right-handed alpha
Helix 31
AD4
A
678 682Right-handed 310
Helix 32
AD5
A
684 692Right-handed alpha
Helix 33
AD6
A
693 695Right-handed 310
Helix 34
AD7
A
701 714Right-handed alpha
Helix 35
AD8
A
714 724Right-handed alpha
Helix 36
AD9
A
776 780Right-handed 310
Helix 37
AE1
A
806 809Right-handed 310
Helix 38
AE2
A
810 818Right-handed alpha
Helix 39
AE3
A
821 830Right-handed alpha
Helix 40
AE4
A
840 850Right-handed alpha
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There are 9 sheets in PDB entry 5HRT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 310first strand
Strand 2
A
165 171parallel
Strand 3
A
352 357parallel
Strand 4
A
485 490anti-parallel
Strand 5
A
196 202anti-parallel
Strand 6
A
498 499parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 310first strand
Strand 2
A
165 171parallel
Strand 3
A
352 357parallel
Strand 4
A
485 490anti-parallel
Strand 5
A
196 202anti-parallel
Strand 6
A
503 504parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 234first strand
Strand 2
A
239 241anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 363first strand
Strand 2
A
472 473anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 371first strand
Strand 2
A
452 454parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 385first strand
Strand 2
A
389 394anti-parallel
Strand 3
A
443 447anti-parallel
Strand 4
A
420 424anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
598 599first strand
Strand 2
A
831 832anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
605 609first strand
Strand 2
A
614 618anti-parallel
Strand 3
A
624 631anti-parallel
Strand 4
A
726 733anti-parallel
Strand 5
A
762 770anti-parallel
Strand 6
A
784 792anti-parallel
Strand 7
A
819 820anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
672 675first strand
Strand 2
A
697 700anti-parallel
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