Analysis of interatomic Contacts of Structural Units in PDB entry:
5HRU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HRU entry

There are 3 chains in PDB entry 5HRU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4ILE 316
B
 PRO 3ILE 316
C
 T 3 A 34
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5HRU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 27Right-handed alpha
Helix 2
AA2
A
39 56Right-handed alpha
Helix 3
AA3
A
66 71Right-handed 310
Helix 4
AA4
A
97 117Right-handed alpha
Helix 5
AA5
A
128 141Right-handed alpha
Helix 6
AA6
A
143 145Right-handed 310
Helix 7
AA7
A
151 168Right-handed alpha
Helix 8
AA8
A
170 172Right-handed 310
Helix 9
AA9
A
190 192Right-handed 310
Helix 10
AB1
A
200 206Right-handed alpha
Helix 11
AB2
A
210 223Right-handed alpha
Helix 12
AB3
A
223 231Right-handed alpha
Helix 13
AB4
A
236 252Right-handed alpha
Helix 14
AB5
A
267 269Right-handed 310
Helix 15
AB6
A
295 314Right-handed alpha
Helix 16
AB7
B
13 27Right-handed alpha
Helix 17
AB8
B
39 56Right-handed alpha
Helix 18
AB9
B
66 71Right-handed 310
Helix 19
AC1
B
94 97Right-handed 310
Helix 20
AC2
B
98 117Right-handed alpha
Helix 21
AC3
B
128 141Right-handed alpha
Helix 22
AC4
B
143 145Right-handed 310
Helix 23
AC5
B
151 168Right-handed alpha
Helix 24
AC6
B
170 172Right-handed 310
Helix 25
AC7
B
190 192Right-handed 310
Helix 26
AC8
B
200 206Right-handed alpha
Helix 27
AC9
B
210 231Right-handed alpha
Helix 28
AD1
B
236 252Right-handed alpha
Helix 29
AD2
B
267 269Right-handed 310
Helix 30
AD3
B
295 314Right-handed alpha
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There are 8 sheets in PDB entry 5HRU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 64first strand
Strand 2
A
30 34parallel
Strand 3
A
6 10parallel
Strand 4
A
75 78parallel
Strand 5
A
121 124parallel
Strand 6
A
147 149parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 175first strand
Strand 2
A
194 195anti-parallel
Strand 3
A
198 199anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
A
187 188anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 265first strand
Strand 2
A
271 282anti-parallel
Strand 3
A
285 289anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 64first strand
Strand 2
B
30 34parallel
Strand 3
B
6 10parallel
Strand 4
B
75 78parallel
Strand 5
B
121 124parallel
Strand 6
B
147 149parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 175first strand
Strand 2
B
194 195anti-parallel
Strand 3
B
198 199anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 179first strand
Strand 2
B
187 188anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
256 265first strand
Strand 2
B
271 282anti-parallel
Strand 3
B
285 289anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il