Analysis of interatomic Contacts of Structural Units in PDB entry:
5HS4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HS4 entry

There is 1 chain in PDB entry 5HS4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4ILE 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 5HS4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 26Right-handed alpha
Helix 2
AA2
A
39 56Right-handed alpha
Helix 3
AA3
A
66 71Right-handed 310
Helix 4
AA4
A
97 117Right-handed alpha
Helix 5
AA5
A
128 141Right-handed alpha
Helix 6
AA6
A
143 145Right-handed 310
Helix 7
AA7
A
151 168Right-handed alpha
Helix 8
AA8
A
170 172Right-handed 310
Helix 9
AA9
A
190 192Right-handed 310
Helix 10
AB1
A
200 206Right-handed alpha
Helix 11
AB2
A
210 223Right-handed alpha
Helix 12
AB3
A
223 231Right-handed alpha
Helix 13
AB4
A
236 252Right-handed alpha
Helix 14
AB5
A
267 269Right-handed 310
Helix 15
AB6
A
295 314Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5HS4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 64first strand
Strand 2
A
30 34parallel
Strand 3
A
6 10parallel
Strand 4
A
75 78parallel
Strand 5
A
121 124parallel
Strand 6
A
147 149parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 175first strand
Strand 2
A
194 195anti-parallel
Strand 3
A
198 199anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
A
187 188anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 265first strand
Strand 2
A
271 282anti-parallel
Strand 3
A
285 289anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il