Analysis of interatomic Contacts of Structural Units in PDB entry:
5HSF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HSF entry

There are 2 chains in PDB entry 5HSF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 315PRO 419
B
 LYS 312PRO 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 5HSF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
330 334Right-handed 310
Helix 2
AA2
A
388 393Right-handed alpha
Helix 3
AA3
B
328 334Right-handed 310
Helix 4
AA4
B
388 393Right-handed alpha
Helix 5
AA5
B
406 408Right-handed 310
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There are 6 sheets in PDB entry 5HSF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 325first strand
Strand 2
A
336 346anti-parallel
Strand 3
A
378 387anti-parallel
Strand 4
A
365 367anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 325first strand
Strand 2
A
336 346anti-parallel
Strand 3
A
378 387anti-parallel
Strand 4
A
371 372anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 361first strand
Strand 2
A
352 357anti-parallel
Strand 3
A
397 402anti-parallel
Strand 4
A
410 415anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
321 325first strand
Strand 2
B
336 346anti-parallel
Strand 3
B
378 387anti-parallel
Strand 4
B
365 367anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
321 325first strand
Strand 2
B
336 346anti-parallel
Strand 3
B
378 387anti-parallel
Strand 4
B
371 372anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
360 361first strand
Strand 2
B
352 357anti-parallel
Strand 3
B
397 402anti-parallel
Strand 4
B
410 415anti-parallel
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