Analysis of interatomic Contacts of Structural Units in PDB entry:
5HSI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HSI entry

There are 2 chains in PDB entry 5HSI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 7VAL 620
B
 ARG 6ALA 618
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 5HSI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 17Right-handed 310
Helix 2
AA2
A
24 46Right-handed alpha
Helix 3
AA3
A
55 60Right-handed alpha
Helix 4
AA4
A
61 86Right-handed alpha
Helix 5
AA5
A
104 116Right-handed alpha
Helix 6
AA6
A
123 126Right-handed 310
Helix 7
AA7
A
127 145Right-handed alpha
Helix 8
AA8
A
157 183Right-handed alpha
Helix 9
AA9
A
184 188Right-handed 310
Helix 10
AB1
A
191 196Right-handed alpha
Helix 11
AB2
A
199 210Right-handed alpha
Helix 12
AB3
A
213 220Right-handed alpha
Helix 13
AB4
A
221 225Right-handed 310
Helix 14
AB5
A
227 232Right-handed 310
Helix 15
AB6
A
240 251Right-handed alpha
Helix 16
AB7
A
254 256Right-handed 310
Helix 17
AB8
A
270 284Right-handed alpha
Helix 18
AB9
A
305 318Right-handed alpha
Helix 19
AC1
A
332 340Right-handed 310
Helix 20
AC2
A
348 350Right-handed 310
Helix 21
AC3
A
351 359Right-handed alpha
Helix 22
AC4
A
370 379Right-handed alpha
Helix 23
AC5
A
380 383Right-handed 310
Helix 24
AC6
A
407 414Right-handed 310
Helix 25
AC7
A
431 436Right-handed 310
Helix 26
AC8
A
442 456Right-handed alpha
Helix 27
AC9
A
462 482Right-handed alpha
Helix 28
AD1
A
517 532Right-handed alpha
Helix 29
AD2
A
553 557Right-handed alpha
Helix 30
AD3
A
560 567Right-handed alpha
Helix 31
AD4
A
570 578Right-handed alpha
Helix 32
AD5
A
594 619Right-handed alpha
Helix 33
AD6
B
12 17Right-handed 310
Helix 34
AD7
B
24 45Right-handed alpha
Helix 35
AD8
B
55 60Right-handed alpha
Helix 36
AD9
B
61 85Right-handed alpha
Helix 37
AE1
B
104 115Right-handed alpha
Helix 38
AE2
B
123 126Right-handed 310
Helix 39
AE3
B
127 145Right-handed alpha
Helix 40
AE4
B
157 183Right-handed alpha
Helix 41
AE5
B
184 188Right-handed 310
Helix 42
AE6
B
191 196Right-handed alpha
Helix 43
AE7
B
199 210Right-handed alpha
Helix 44
AE8
B
213 220Right-handed alpha
Helix 45
AE9
B
221 225Right-handed 310
Helix 46
AF1
B
228 232Right-handed 310
Helix 47
AF2
B
240 252Right-handed alpha
Helix 48
AF3
B
254 256Right-handed 310
Helix 49
AF4
B
270 284Right-handed alpha
Helix 50
AF5
B
305 318Right-handed alpha
Helix 51
AF6
B
332 340Right-handed 310
Helix 52
AF7
B
348 350Right-handed 310
Helix 53
AF8
B
351 359Right-handed alpha
Helix 54
AF9
B
370 379Right-handed alpha
Helix 55
AG1
B
380 383Right-handed 310
Helix 56
AG2
B
407 414Right-handed 310
Helix 57
AG3
B
431 436Right-handed 310
Helix 58
AG4
B
442 456Right-handed alpha
Helix 59
AG5
B
462 482Right-handed alpha
Helix 60
AG6
B
517 532Right-handed alpha
Helix 61
AG7
B
553 557Right-handed alpha
Helix 62
AG8
B
560 567Right-handed alpha
Helix 63
AG9
B
570 578Right-handed alpha
Helix 64
AH1
B
594 618Right-handed alpha
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There are 4 sheets in PDB entry 5HSI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 96first strand
Strand 2
A
545 552parallel
Strand 3
A
579 586anti-parallel
Strand 4
A
505 512anti-parallel
Strand 5
A
491 497anti-parallel
Strand 6
A
485 488anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 155first strand
Strand 2
A
401 405anti-parallel
Strand 3
A
385 387anti-parallel
Strand 4
A
324 328parallel
Strand 5
A
288 294parallel
Strand 6
A
233 237parallel
Strand 7
A
258 261parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 96first strand
Strand 2
B
545 552parallel
Strand 3
B
579 586anti-parallel
Strand 4
B
505 512anti-parallel
Strand 5
B
491 497anti-parallel
Strand 6
B
485 488anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 155first strand
Strand 2
B
401 405anti-parallel
Strand 3
B
385 387anti-parallel
Strand 4
B
324 328parallel
Strand 5
B
288 294parallel
Strand 6
B
233 237parallel
Strand 7
B
258 261parallel
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