Analysis of interatomic Contacts of Structural Units in PDB entry:
5HSS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5HSS entry

There are 4 chains in PDB entry 5HSS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	ALA 366
B	ALA 1	ALA 366
C	ALA 1	ALA 365
D	ALA 1	THR 153

There are 97 helices in PDB entry 5HSS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	21	Right-handed alpha
Helix 2	AA2	A	24	36	Right-handed alpha
Helix 3	AA3	A	50	57	Right-handed alpha
Helix 4	AA4	A	59	61	Right-handed 310
Helix 5	AA5	A	62	81	Right-handed alpha
Helix 6	AA6	A	84	100	Right-handed alpha
Helix 7	AA7	A	101	106	Right-handed alpha
Helix 8	AA8	A	106	111	Right-handed alpha
Helix 9	AA9	A	122	141	Right-handed alpha
Helix 10	AB1	A	145	163	Right-handed alpha
Helix 11	AB2	A	176	194	Right-handed alpha
Helix 12	AB3	A	197	200	Right-handed 310
Helix 13	AB4	A	201	213	Right-handed alpha
Helix 14	AB5	A	237	252	Right-handed alpha
Helix 15	AB6	A	252	267	Right-handed alpha
Helix 16	AB7	A	294	307	Right-handed alpha
Helix 17	AB8	A	308	320	Right-handed alpha
Helix 18	AB9	A	321	323	Right-handed 310
Helix 19	AC1	A	341	352	Right-handed alpha
Helix 20	AC2	A	354	360	Right-handed alpha
Helix 21	AC3	B	10	21	Right-handed alpha
Helix 22	AC4	B	24	36	Right-handed alpha
Helix 23	AC5	B	50	57	Right-handed alpha
Helix 24	AC6	B	59	61	Right-handed 310
Helix 25	AC7	B	62	81	Right-handed alpha
Helix 26	AC8	B	84	100	Right-handed alpha
Helix 27	AC9	B	101	106	Right-handed alpha
Helix 28	AD1	B	106	111	Right-handed alpha
Helix 29	AD2	B	122	141	Right-handed alpha
Helix 30	AD3	B	145	163	Right-handed alpha
Helix 31	AD4	B	176	194	Right-handed alpha
Helix 32	AD5	B	197	200	Right-handed 310
Helix 33	AD6	B	201	213	Right-handed alpha
Helix 34	AD7	B	237	250	Right-handed alpha
Helix 35	AD8	B	252	267	Right-handed alpha
Helix 36	AD9	B	294	307	Right-handed alpha
Helix 37	AE1	B	308	324	Right-handed alpha
Helix 38	AE2	B	341	352	Right-handed alpha
Helix 39	AE3	B	354	360	Right-handed alpha
Helix 40	AE4	C	10	16	Right-handed alpha
Helix 41	AE5	C	16	21	Right-handed alpha
Helix 42	AE6	C	24	36	Right-handed alpha
Helix 43	AE7	C	50	57	Right-handed alpha
Helix 44	AE8	C	59	61	Right-handed 310
Helix 45	AE9	C	62	81	Right-handed alpha
Helix 46	AF1	C	84	100	Right-handed alpha
Helix 47	AF2	C	101	111	Right-handed alpha
Helix 48	AF3	C	122	141	Right-handed alpha
Helix 49	AF4	C	145	163	Right-handed alpha
Helix 50	AF5	C	176	194	Right-handed alpha
Helix 51	AF6	C	197	200	Right-handed 310
Helix 52	AF7	C	201	213	Right-handed alpha
Helix 53	AF8	C	237	252	Right-handed alpha
Helix 54	AF9	C	252	267	Right-handed alpha
Helix 55	AG1	C	294	307	Right-handed alpha
Helix 56	AG2	C	308	324	Right-handed alpha
Helix 57	AG3	C	341	352	Right-handed alpha
Helix 58	AG4	C	354	360	Right-handed alpha
Helix 59	AG5	D	10	21	Right-handed alpha
Helix 60	AG6	D	24	36	Right-handed alpha
Helix 61	AG7	D	50	56	Right-handed alpha
Helix 62	AG8	D	59	61	Right-handed 310
Helix 63	AG9	D	62	81	Right-handed alpha
Helix 64	AH1	D	84	100	Right-handed alpha
Helix 65	AH2	D	101	106	Right-handed alpha
Helix 66	AH3	D	106	111	Right-handed alpha
Helix 67	AH4	D	122	141	Right-handed alpha
Helix 68	AH5	D	145	163	Right-handed alpha
Helix 69	AH6	D	176	194	Right-handed alpha
Helix 70	AH7	D	197	200	Right-handed 310
Helix 71	AH8	D	201	213	Right-handed alpha
Helix 72	AH9	D	237	252	Right-handed alpha
Helix 73	AI1	D	252	267	Right-handed alpha
Helix 74	AI2	D	294	307	Right-handed alpha
Helix 75	AI3	D	308	320	Right-handed alpha
Helix 76	AI4	D	321	323	Right-handed 310
Helix 77	AI5	D	341	352	Right-handed alpha
Helix 78	AI6	D	354	360	Right-handed alpha
Helix 79	AI7	E	10	21	Right-handed alpha
Helix 80	AI8	E	24	36	Right-handed alpha
Helix 81	AI9	E	50	56	Right-handed alpha
Helix 82	AJ1	E	59	61	Right-handed 310
Helix 83	AJ2	E	62	81	Right-handed alpha
Helix 84	AJ3	E	84	100	Right-handed alpha
Helix 85	AJ4	E	101	106	Right-handed alpha
Helix 86	AJ5	E	106	111	Right-handed alpha
Helix 87	AJ6	E	122	141	Right-handed alpha
Helix 88	AJ7	E	145	163	Right-handed alpha
Helix 89	AJ8	E	176	194	Right-handed alpha
Helix 90	AJ9	E	197	200	Right-handed 310
Helix 91	AK1	E	201	213	Right-handed alpha
Helix 92	AK2	E	237	249	Right-handed alpha
Helix 93	AK3	E	252	267	Right-handed alpha
Helix 94	AK4	E	294	307	Right-handed alpha
Helix 95	AK5	E	308	324	Right-handed alpha
Helix 96	AK6	E	341	352	Right-handed alpha
Helix 97	AK7	E	354	360	Right-handed alpha

There are 20 sheets in PDB entry 5HSS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	215	first strand
Strand 2	A	220	221	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	226	first strand
Strand 2	A	231	232	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	271	first strand
Strand 2	A	276	279	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	328	first strand
Strand 2	A	331	334	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	214	215	first strand
Strand 2	B	220	221	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	226	first strand
Strand 2	B	231	232	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	271	first strand
Strand 2	B	276	279	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	328	first strand
Strand 2	B	331	334	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	214	215	first strand
Strand 2	C	220	221	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	226	first strand
Strand 2	C	231	232	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	268	271	first strand
Strand 2	C	276	279	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	328	first strand
Strand 2	C	331	334	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	214	215	first strand
Strand 2	D	220	221	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	225	226	first strand
Strand 2	D	231	232	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	268	271	first strand
Strand 2	D	276	279	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	325	328	first strand
Strand 2	D	331	334	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	214	215	first strand
Strand 2	E	220	221	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	225	226	first strand
Strand 2	E	231	232	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	268	271	first strand
Strand 2	E	276	279	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	325	328	first strand
Strand 2	E	331	334	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5HSS

Analysis of interatomic Contacts of Structural Units in PDB entry:
5HSS