Analysis of interatomic Contacts of Structural Units in PDB entry:
5HSW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HSW entry

There are 2 chains in PDB entry 5HSW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 6ASN 481
B
 U 3 G 28
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5HSW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 43Right-handed alpha
Helix 2
AA2
A
43 51Right-handed alpha
Helix 3
AA3
A
60 78Right-handed alpha
Helix 4
AA4
A
81 90Right-handed alpha
Helix 5
AA5
A
99 109Right-handed alpha
Helix 6
AA6
A
111 126Right-handed alpha
Helix 7
AA7
A
133 140Right-handed alpha
Helix 8
AA8
A
147 154Right-handed alpha
Helix 9
AA9
A
183 195Right-handed alpha
Helix 10
AB1
A
249 252Right-handed 310
Helix 11
AB2
A
259 270Right-handed alpha
Helix 12
AB3
A
273 282Right-handed alpha
Helix 13
AB4
A
308 312Right-handed 310
Helix 14
AB5
A
325 336Right-handed alpha
Helix 15
AB6
A
371 389Right-handed alpha
Helix 16
AB7
A
445 468Right-handed alpha
Helix 17
AB8
A
477 481Right-handed 310
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There are 5 sheets in PDB entry 5HSW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
216 218parallel
Strand 3
A
208 209anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
222 224anti-parallel
Strand 3
A
241 247anti-parallel
Strand 4
A
401 410parallel
Strand 5
A
433 442anti-parallel
Strand 6
A
340 345anti-parallel
Strand 7
A
357 363anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
234 235anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 305first strand
Strand 2
A
366 367anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 355first strand
Strand 2
A
420 422parallel
Strand 3
A
425 427anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il