Analysis of interatomic Contacts of Structural Units in PDB entry:
5HT0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5HT0 entry

There are 5 chains in PDB entry 5HT0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 4	ALA 262
B	SER 3	ALA 262
C	SER 3	ARG 263
D	SER 3	ALA 262
E	SER 3	ARG 260

There are 80 helices in PDB entry 5HT0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	19	Right-handed alpha
Helix 2	AA2	A	32	36	Right-handed 310
Helix 3	AA3	A	42	54	Right-handed alpha
Helix 4	AA4	A	69	74	Right-handed alpha
Helix 5	AA5	A	77	81	Right-handed 310
Helix 6	AA6	A	92	95	Right-handed 310
Helix 7	AA7	A	96	104	Right-handed alpha
Helix 8	AA8	A	124	130	Right-handed alpha
Helix 9	AA9	A	142	150	Right-handed alpha
Helix 10	AB1	A	160	164	Right-handed 310
Helix 11	AB2	A	165	174	Right-handed alpha
Helix 12	AB3	A	214	227	Right-handed alpha
Helix 13	AB4	A	244	261	Right-handed alpha
Helix 14	AB5	B	7	19	Right-handed alpha
Helix 15	AB6	B	32	36	Right-handed 310
Helix 16	AB7	B	42	54	Right-handed alpha
Helix 17	AB8	B	69	74	Right-handed alpha
Helix 18	AB9	B	92	96	Right-handed 310
Helix 19	AC1	B	97	105	Right-handed alpha
Helix 20	AC2	B	124	130	Right-handed alpha
Helix 21	AC3	B	142	150	Right-handed alpha
Helix 22	AC4	B	160	164	Right-handed 310
Helix 23	AC5	B	165	174	Right-handed alpha
Helix 24	AC6	B	207	211	Right-handed 310
Helix 25	AC7	B	214	226	Right-handed alpha
Helix 26	AC8	B	244	262	Right-handed alpha
Helix 27	AC9	C	7	19	Right-handed alpha
Helix 28	AD1	C	31	35	Right-handed 310
Helix 29	AD2	C	42	54	Right-handed alpha
Helix 30	AD3	C	69	74	Right-handed alpha
Helix 31	AD4	C	77	81	Right-handed 310
Helix 32	AD5	C	92	96	Right-handed 310
Helix 33	AD6	C	97	104	Right-handed alpha
Helix 34	AD7	C	124	130	Right-handed alpha
Helix 35	AD8	C	142	150	Right-handed alpha
Helix 36	AD9	C	160	164	Right-handed 310
Helix 37	AE1	C	165	174	Right-handed alpha
Helix 38	AE2	C	214	225	Right-handed alpha
Helix 39	AE3	C	244	262	Right-handed alpha
Helix 40	AE4	D	7	19	Right-handed alpha
Helix 41	AE5	D	32	36	Right-handed 310
Helix 42	AE6	D	42	54	Right-handed alpha
Helix 43	AE7	D	68	72	Right-handed 310
Helix 44	AE8	D	77	81	Right-handed 310
Helix 45	AE9	D	96	104	Right-handed alpha
Helix 46	AF1	D	113	116	Right-handed 310
Helix 47	AF2	D	124	130	Right-handed alpha
Helix 48	AF3	D	142	150	Right-handed alpha
Helix 49	AF4	D	160	164	Right-handed 310
Helix 50	AF5	D	165	174	Right-handed alpha
Helix 51	AF6	D	214	226	Right-handed alpha
Helix 52	AF7	D	244	260	Right-handed alpha
Helix 53	AF8	E	7	19	Right-handed alpha
Helix 54	AF9	E	32	35	Right-handed 310
Helix 55	AG1	E	42	54	Right-handed alpha
Helix 56	AG2	E	69	74	Right-handed alpha
Helix 57	AG3	E	92	95	Right-handed 310
Helix 58	AG4	E	96	104	Right-handed alpha
Helix 59	AG5	E	113	116	Right-handed 310
Helix 60	AG6	E	124	130	Right-handed alpha
Helix 61	AG7	E	142	150	Right-handed alpha
Helix 62	AG8	E	160	165	Right-handed 310
Helix 63	AG9	E	166	174	Right-handed alpha
Helix 64	AH1	E	212	214	Right-handed 310
Helix 65	AH2	E	215	225	Right-handed alpha
Helix 66	AH3	E	244	259	Right-handed alpha
Helix 67	AH4	F	7	19	Right-handed alpha
Helix 68	AH5	F	32	36	Right-handed 310
Helix 69	AH6	F	42	54	Right-handed alpha
Helix 70	AH7	F	67	74	Right-handed alpha
Helix 71	AH8	F	77	81	Right-handed 310
Helix 72	AH9	F	92	95	Right-handed 310
Helix 73	AI1	F	96	104	Right-handed alpha
Helix 74	AI2	F	113	116	Right-handed 310
Helix 75	AI3	F	124	130	Right-handed alpha
Helix 76	AI4	F	142	150	Right-handed alpha
Helix 77	AI5	F	160	164	Right-handed 310
Helix 78	AI6	F	165	173	Right-handed alpha
Helix 79	AI7	F	214	225	Right-handed alpha
Helix 80	AI8	F	244	259	Right-handed alpha

There are 13 sheets in PDB entry 5HT0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	110	first strand
Strand 2	A	118	122	anti-parallel
Strand 3	A	58	62	anti-parallel
Strand 4	A	25	30	parallel
Strand 5	A	153	157	parallel
Strand 6	A	237	243	anti-parallel
Strand 7	A	230	234	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	190	first strand
Strand 2	A	193	202	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	110	first strand
Strand 2	B	118	122	anti-parallel
Strand 3	B	58	62	anti-parallel
Strand 4	B	25	30	parallel
Strand 5	B	153	157	parallel
Strand 6	B	237	243	anti-parallel
Strand 7	B	230	234	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	190	first strand
Strand 2	B	193	202	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	110	first strand
Strand 2	C	119	122	anti-parallel
Strand 3	C	58	61	anti-parallel
Strand 4	C	25	29	parallel
Strand 5	C	153	156	parallel
Strand 6	C	237	243	anti-parallel
Strand 7	C	230	234	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	190	first strand
Strand 2	C	193	202	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	D	37	38	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	110	first strand
Strand 2	D	118	122	anti-parallel
Strand 3	D	58	62	anti-parallel
Strand 4	D	25	30	parallel
Strand 5	D	153	157	parallel
Strand 6	D	237	243	anti-parallel
Strand 7	D	230	234	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	190	first strand
Strand 2	D	193	202	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	109	110	first strand
Strand 2	E	118	122	anti-parallel
Strand 3	E	58	62	anti-parallel
Strand 4	E	26	30	parallel
Strand 5	E	153	157	parallel
Strand 6	E	237	243	anti-parallel
Strand 7	E	230	234	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	181	190	first strand
Strand 2	E	193	202	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	109	110	first strand
Strand 2	F	118	122	anti-parallel
Strand 3	F	58	62	anti-parallel
Strand 4	F	25	30	parallel
Strand 5	F	153	157	parallel
Strand 6	F	237	243	anti-parallel
Strand 7	F	230	234	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	181	190	first strand
Strand 2	F	193	202	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5HT0

Analysis of interatomic Contacts of Structural Units in PDB entry:
5HT0