Analysis of interatomic Contacts of Structural Units in PDB entry:
5HTF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HTF entry

There are 2 chains in PDB entry 5HTF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 21THR 282
B
 GLY 23SER 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5HTF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 66Right-handed alpha
Helix 2
AA2
A
69 85Right-handed alpha
Helix 3
AA3
A
87 95Right-handed alpha
Helix 4
AA4
A
98 118Right-handed alpha
Helix 5
AA5
A
123 134Right-handed alpha
Helix 6
AA6
A
147 161Right-handed alpha
Helix 7
AA7
A
163 172Right-handed alpha
Helix 8
AA8
A
177 181Right-handed 310
Helix 9
AA9
A
193 202Right-handed alpha
Helix 10
AB1
A
232 248Right-handed alpha
Helix 11
AB2
A
250 266Right-handed alpha
Helix 12
AB3
A
271 275Right-handed 310
Helix 13
AB4
A
278 282Right-handed 310
Helix 14
AB5
B
37 66Right-handed alpha
Helix 15
AB6
B
69 85Right-handed alpha
Helix 16
AB7
B
87 95Right-handed alpha
Helix 17
AB8
B
98 118Right-handed alpha
Helix 18
AB9
B
123 134Right-handed alpha
Helix 19
AC1
B
147 157Right-handed alpha
Helix 20
AC2
B
163 172Right-handed alpha
Helix 21
AC3
B
177 181Right-handed 310
Helix 22
AC4
B
193 202Right-handed alpha
Helix 23
AC5
B
237 248Right-handed alpha
Helix 24
AC6
B
250 265Right-handed alpha
Helix 25
AC7
B
271 275Right-handed 310
Helix 26
AC8
B
278 282Right-handed 310
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There are 4 sheets in PDB entry 5HTF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
26 30anti-parallel
Strand 3
B
268 269anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 145first strand
Strand 2
A
219 226anti-parallel
Strand 3
A
213 214anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 269first strand
Strand 2
B
26 30anti-parallel
Strand 3
B
33 36anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 145first strand
Strand 2
B
219 226anti-parallel
Strand 3
B
213 214anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il