Analysis of interatomic Contacts of Structural Units in PDB entry:
5HTP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HTP entry

There is 1 chain in PDB entry 5HTP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2SER 420
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5HTP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 55Right-handed alpha
Helix 2
AA2
A
56 61Right-handed alpha
Helix 3
AA3
A
98 102Right-handed 310
Helix 4
AA4
A
117 130Right-handed alpha
Helix 5
AA5
A
141 151Right-handed alpha
Helix 6
AA6
A
159 165Right-handed 310
Helix 7
AA7
A
174 180Right-handed alpha
Helix 8
AA8
A
182 186Right-handed 310
Helix 9
AA9
A
200 207Right-handed alpha
Helix 10
AB1
A
221 230Right-handed alpha
Helix 11
AB2
A
280 286Right-handed alpha
Helix 12
AB3
A
289 298Right-handed alpha
Helix 13
AB4
A
337 363Right-handed alpha
Helix 14
AB5
A
380 392Right-handed alpha
Helix 15
AB6
A
402 414Right-handed alpha
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There are 5 sheets in PDB entry 5HTP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 32first strand
Strand 2
A
13 20anti-parallel
Strand 3
A
3 9anti-parallel
Strand 4
A
65 70parallel
Strand 5
A
214 216parallel
Strand 6
A
195 198anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 32first strand
Strand 2
A
13 20anti-parallel
Strand 3
A
3 9anti-parallel
Strand 4
A
65 70parallel
Strand 5
A
219 220parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 78first strand
Strand 2
A
137 140anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 157first strand
Strand 2
A
188 190parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 267first strand
Strand 2
A
270 276anti-parallel
Strand 3
A
245 251anti-parallel
Strand 4
A
236 241anti-parallel
Strand 5
A
370 374parallel
Strand 6
A
395 397parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il