Analysis of interatomic Contacts of Structural Units in PDB entry:
5HTR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HTR entry

There is 1 chain in PDB entry 5HTR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 11SER 434
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5HTR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 69Right-handed alpha
Helix 2
AA2
A
70 75Right-handed alpha
Helix 3
AA3
A
110 112Right-handed 310
Helix 4
AA4
A
113 121Right-handed alpha
Helix 5
AA5
A
132 143Right-handed alpha
Helix 6
AA6
A
147 149Right-handed 310
Helix 7
AA7
A
156 166Right-handed alpha
Helix 8
AA8
A
176 180Right-handed 310
Helix 9
AA9
A
189 194Right-handed alpha
Helix 10
AB1
A
195 201Right-handed 310
Helix 11
AB2
A
215 223Right-handed alpha
Helix 12
AB3
A
236 244Right-handed alpha
Helix 13
AB4
A
295 303Right-handed alpha
Helix 14
AB5
A
304 313Right-handed alpha
Helix 15
AB6
A
352 378Right-handed alpha
Helix 16
AB7
A
390 394Right-handed 310
Helix 17
AB8
A
395 407Right-handed alpha
Helix 18
AB9
A
417 434Right-handed alpha
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There are 5 sheets in PDB entry 5HTR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 42first strand
Strand 2
A
23 29anti-parallel
Strand 3
A
13 19anti-parallel
Strand 4
A
77 84parallel
Strand 5
A
229 231parallel
Strand 6
A
210 213anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 42first strand
Strand 2
A
23 29anti-parallel
Strand 3
A
13 19anti-parallel
Strand 4
A
77 84parallel
Strand 5
A
234 235parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 93first strand
Strand 2
A
151 155anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 172first strand
Strand 2
A
203 205parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 282first strand
Strand 2
A
285 292anti-parallel
Strand 3
A
260 266anti-parallel
Strand 4
A
251 256anti-parallel
Strand 5
A
385 389parallel
Strand 6
A
410 412parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il