Analysis of interatomic Contacts of Structural Units in PDB entry:
5HUD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5HUD entry

There are 8 chains in PDB entry 5HUD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 29	ASN 472
B	PRO 29	ASN 472
C	HIS 7	ASN 472
D	HIS 6	ASN 472
E	ASP 7	GLY 90
F	PRO 8	GLY 90
G	PRO 8	GLY 90
H	PRO 8	GLY 90

There are 79 helices in PDB entry 5HUD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	41	Right-handed alpha
Helix 2	AA2	A	51	64	Right-handed alpha
Helix 3	AA3	A	70	86	Right-handed alpha
Helix 4	AA4	A	105	128	Right-handed alpha
Helix 5	AA5	A	168	173	Right-handed alpha
Helix 6	AA6	A	177	199	Right-handed alpha
Helix 7	AA7	A	203	218	Right-handed alpha
Helix 8	AA8	A	220	241	Right-handed alpha
Helix 9	AA9	A	261	268	Right-handed alpha
Helix 10	AB1	A	292	296	Right-handed 310
Helix 11	AB2	A	300	309	Right-handed alpha
Helix 12	AB3	A	322	334	Right-handed alpha
Helix 13	AB4	A	352	367	Right-handed alpha
Helix 14	AB5	A	393	412	Right-handed alpha
Helix 15	AB6	A	438	445	Right-handed 310
Helix 16	AB7	A	455	472	Right-handed alpha
Helix 17	AB8	B	30	41	Right-handed alpha
Helix 18	AB9	B	51	63	Right-handed alpha
Helix 19	AC1	B	70	86	Right-handed alpha
Helix 20	AC2	B	105	128	Right-handed alpha
Helix 21	AC3	B	177	199	Right-handed alpha
Helix 22	AC4	B	203	218	Right-handed alpha
Helix 23	AC5	B	220	241	Right-handed alpha
Helix 24	AC6	B	245	250	Right-handed 310
Helix 25	AC7	B	261	267	Right-handed alpha
Helix 26	AC8	B	292	296	Right-handed 310
Helix 27	AC9	B	300	309	Right-handed alpha
Helix 28	AD1	B	322	334	Right-handed alpha
Helix 29	AD2	B	349	367	Right-handed alpha
Helix 30	AD3	B	393	412	Right-handed alpha
Helix 31	AD4	B	438	442	Right-handed 310
Helix 32	AD5	B	455	472	Right-handed alpha
Helix 33	AD6	C	8	17	Right-handed alpha
Helix 34	AD7	C	29	41	Right-handed alpha
Helix 35	AD8	C	51	63	Right-handed alpha
Helix 36	AD9	C	70	86	Right-handed alpha
Helix 37	AE1	C	105	128	Right-handed alpha
Helix 38	AE2	C	168	173	Right-handed alpha
Helix 39	AE3	C	177	200	Right-handed alpha
Helix 40	AE4	C	203	218	Right-handed alpha
Helix 41	AE5	C	220	241	Right-handed alpha
Helix 42	AE6	C	261	268	Right-handed alpha
Helix 43	AE7	C	292	296	Right-handed 310
Helix 44	AE8	C	300	308	Right-handed alpha
Helix 45	AE9	C	322	334	Right-handed alpha
Helix 46	AF1	C	352	367	Right-handed alpha
Helix 47	AF2	C	393	412	Right-handed alpha
Helix 48	AF3	C	438	442	Right-handed 310
Helix 49	AF4	C	455	472	Right-handed alpha
Helix 50	AF5	D	7	17	Right-handed alpha
Helix 51	AF6	D	31	42	Right-handed alpha
Helix 52	AF7	D	51	63	Right-handed alpha
Helix 53	AF8	D	70	86	Right-handed alpha
Helix 54	AF9	D	105	128	Right-handed alpha
Helix 55	AG1	D	168	173	Right-handed alpha
Helix 56	AG2	D	177	199	Right-handed alpha
Helix 57	AG3	D	203	218	Right-handed alpha
Helix 58	AG4	D	220	241	Right-handed alpha
Helix 59	AG5	D	245	249	Right-handed 310
Helix 60	AG6	D	261	268	Right-handed alpha
Helix 61	AG7	D	292	296	Right-handed 310
Helix 62	AG8	D	300	307	Right-handed alpha
Helix 63	AG9	D	322	334	Right-handed alpha
Helix 64	AH1	D	352	367	Right-handed alpha
Helix 65	AH2	D	393	412	Right-handed alpha
Helix 66	AH3	D	438	442	Right-handed 310
Helix 67	AH4	D	455	472	Right-handed alpha
Helix 68	AH5	E	8	49	Right-handed alpha
Helix 69	AH6	E	55	71	Right-handed alpha
Helix 70	AH7	E	73	87	Right-handed alpha
Helix 71	AH8	F	9	48	Right-handed alpha
Helix 72	AH9	F	55	71	Right-handed alpha
Helix 73	AI1	F	73	87	Right-handed alpha
Helix 74	AI2	G	9	49	Right-handed alpha
Helix 75	AI3	G	55	71	Right-handed alpha
Helix 76	AI4	G	73	87	Right-handed alpha
Helix 77	AI5	H	9	49	Right-handed alpha
Helix 78	AI6	H	55	71	Right-handed alpha
Helix 79	AI7	H	73	87	Right-handed alpha

There are 12 sheets in PDB entry 5HUD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	95	first strand
Strand 2	A	131	136	parallel
Strand 3	A	253	258	parallel
Strand 4	A	288	291	parallel
Strand 5	A	313	317	parallel
Strand 6	A	342	346	parallel
Strand 7	A	372	375	parallel
Strand 8	A	415	421	parallel
Strand 9	A	90	95	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	273	first strand
Strand 2	A	279	283	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	383	384	first strand
Strand 2	A	390	391	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	95	first strand
Strand 2	B	131	136	parallel
Strand 3	B	253	258	parallel
Strand 4	B	288	291	parallel
Strand 5	B	313	317	parallel
Strand 6	B	342	346	parallel
Strand 7	B	372	375	parallel
Strand 8	B	417	421	parallel
Strand 9	B	90	95	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	273	first strand
Strand 2	B	279	283	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	383	384	first strand
Strand 2	B	390	391	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	95	first strand
Strand 2	C	131	136	parallel
Strand 3	C	253	258	parallel
Strand 4	C	288	291	parallel
Strand 5	C	313	317	parallel
Strand 6	C	342	346	parallel
Strand 7	C	372	375	parallel
Strand 8	C	417	421	parallel
Strand 9	C	90	95	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	273	first strand
Strand 2	C	279	283	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	383	384	first strand
Strand 2	C	390	391	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	95	first strand
Strand 2	D	131	136	parallel
Strand 3	D	253	258	parallel
Strand 4	D	288	291	parallel
Strand 5	D	313	317	parallel
Strand 6	D	342	346	parallel
Strand 7	D	372	375	parallel
Strand 8	D	417	421	parallel
Strand 9	D	90	95	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	269	273	first strand
Strand 2	D	279	283	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	382	384	first strand
Strand 2	D	390	392	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5HUD

Analysis of interatomic Contacts of Structural Units in PDB entry:
5HUD