Analysis of interatomic Contacts of Structural Units in PDB entry:
5HUL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5HUL entry

There are 4 chains in PDB entry 5HUL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 5	ASP 288
B	SER 5	ASP 288
C	THR 6	ASP 288
D	SER 5	ASP 288

There are 44 helices in PDB entry 5HUL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	25	Right-handed alpha
Helix 2	AA2	A	29	36	Right-handed alpha
Helix 3	AA3	A	56	68	Right-handed alpha
Helix 4	AA4	A	97	129	Right-handed alpha
Helix 5	AA5	A	145	156	Right-handed alpha
Helix 6	AA6	A	172	180	Right-handed alpha
Helix 7	AA7	A	181	193	Right-handed alpha
Helix 8	AA8	A	205	215	Right-handed alpha
Helix 9	AA9	A	226	238	Right-handed alpha
Helix 10	AB1	A	252	258	Right-handed 310
Helix 11	AB2	A	268	273	Right-handed alpha
Helix 12	AB3	B	9	25	Right-handed alpha
Helix 13	AB4	B	29	34	Right-handed alpha
Helix 14	AB5	B	56	68	Right-handed alpha
Helix 15	AB6	B	96	129	Right-handed alpha
Helix 16	AB7	B	145	156	Right-handed alpha
Helix 17	AB8	B	172	180	Right-handed alpha
Helix 18	AB9	B	181	193	Right-handed alpha
Helix 19	AC1	B	205	215	Right-handed alpha
Helix 20	AC2	B	226	238	Right-handed alpha
Helix 21	AC3	B	252	258	Right-handed 310
Helix 22	AC4	B	268	273	Right-handed alpha
Helix 23	AC5	C	9	25	Right-handed alpha
Helix 24	AC6	C	29	34	Right-handed alpha
Helix 25	AC7	C	56	68	Right-handed alpha
Helix 26	AC8	C	97	129	Right-handed alpha
Helix 27	AC9	C	145	156	Right-handed alpha
Helix 28	AD1	C	172	180	Right-handed alpha
Helix 29	AD2	C	181	193	Right-handed alpha
Helix 30	AD3	C	205	215	Right-handed alpha
Helix 31	AD4	C	226	238	Right-handed alpha
Helix 32	AD5	C	252	258	Right-handed 310
Helix 33	AD6	C	268	273	Right-handed alpha
Helix 34	AD7	D	9	25	Right-handed alpha
Helix 35	AD8	D	29	36	Right-handed alpha
Helix 36	AD9	D	56	68	Right-handed alpha
Helix 37	AE1	D	97	129	Right-handed alpha
Helix 38	AE2	D	145	156	Right-handed alpha
Helix 39	AE3	D	172	180	Right-handed alpha
Helix 40	AE4	D	181	193	Right-handed alpha
Helix 41	AE5	D	205	215	Right-handed alpha
Helix 42	AE6	D	226	238	Right-handed alpha
Helix 43	AE7	D	252	258	Right-handed 310
Helix 44	AE8	D	268	273	Right-handed alpha

There are 12 sheets in PDB entry 5HUL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	73	first strand
Strand 2	A	89	96	anti-parallel
Strand 3	A	41	48	anti-parallel
Strand 4	A	279	286	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	83	84	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	136	first strand
Strand 2	A	264	266	parallel
Strand 3	A	242	246	parallel
Strand 4	A	219	223	parallel
Strand 5	A	199	203	parallel
Strand 6	A	169	171	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	73	first strand
Strand 2	B	89	95	anti-parallel
Strand 3	B	42	48	anti-parallel
Strand 4	B	279	286	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	53	first strand
Strand 2	B	83	84	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	136	first strand
Strand 2	B	264	266	parallel
Strand 3	B	242	246	parallel
Strand 4	B	219	223	parallel
Strand 5	B	199	203	parallel
Strand 6	B	169	171	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	73	first strand
Strand 2	C	89	96	anti-parallel
Strand 3	C	41	48	anti-parallel
Strand 4	C	279	286	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	83	84	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	136	first strand
Strand 2	C	264	266	parallel
Strand 3	C	242	246	parallel
Strand 4	C	219	223	parallel
Strand 5	C	199	203	parallel
Strand 6	C	169	171	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	73	first strand
Strand 2	D	89	96	anti-parallel
Strand 3	D	41	48	anti-parallel
Strand 4	D	279	286	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	53	first strand
Strand 2	D	83	84	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	136	first strand
Strand 2	D	264	266	parallel
Strand 3	D	242	246	parallel
Strand 4	D	219	223	parallel
Strand 5	D	199	203	parallel
Strand 6	D	169	171	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5HUL

Analysis of interatomic Contacts of Structural Units in PDB entry:
5HUL