Analysis of interatomic Contacts of Structural Units in PDB entry:
5HUP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5HUP entry

There are 5 chains in PDB entry 5HUP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 5	ASP 289
B	SER 5	ASP 289
C	LEU 8	ASP 289
E	SER 5	LEU 288
F	THR 6	ILE 220

There are 72 helices in PDB entry 5HUP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	25	Right-handed alpha
Helix 2	AA2	A	29	36	Right-handed alpha
Helix 3	AA3	A	56	68	Right-handed alpha
Helix 4	AA4	A	98	104	Right-handed alpha
Helix 5	AA5	A	104	130	Right-handed alpha
Helix 6	AA6	A	146	157	Right-handed alpha
Helix 7	AA7	A	173	181	Right-handed alpha
Helix 8	AA8	A	183	194	Right-handed alpha
Helix 9	AA9	A	206	216	Right-handed alpha
Helix 10	AB1	A	227	239	Right-handed alpha
Helix 11	AB2	A	254	259	Right-handed 310
Helix 12	AB3	A	269	274	Right-handed alpha
Helix 13	AB4	B	9	25	Right-handed alpha
Helix 14	AB5	B	29	36	Right-handed alpha
Helix 15	AB6	B	56	68	Right-handed alpha
Helix 16	AB7	B	98	104	Right-handed alpha
Helix 17	AB8	B	104	130	Right-handed alpha
Helix 18	AB9	B	146	157	Right-handed alpha
Helix 19	AC1	B	173	181	Right-handed alpha
Helix 20	AC2	B	183	194	Right-handed alpha
Helix 21	AC3	B	206	216	Right-handed alpha
Helix 22	AC4	B	227	239	Right-handed alpha
Helix 23	AC5	B	254	259	Right-handed 310
Helix 24	AC6	B	269	274	Right-handed alpha
Helix 25	AC7	C	9	25	Right-handed alpha
Helix 26	AC8	C	29	34	Right-handed alpha
Helix 27	AC9	C	56	68	Right-handed alpha
Helix 28	AD1	C	97	104	Right-handed alpha
Helix 29	AD2	C	104	130	Right-handed alpha
Helix 30	AD3	C	146	157	Right-handed alpha
Helix 31	AD4	C	173	181	Right-handed alpha
Helix 32	AD5	C	183	194	Right-handed alpha
Helix 33	AD6	C	206	214	Right-handed alpha
Helix 34	AD7	C	227	239	Right-handed alpha
Helix 35	AD8	C	253	259	Right-handed 310
Helix 36	AD9	C	269	274	Right-handed alpha
Helix 37	AE1	E	9	25	Right-handed alpha
Helix 38	AE2	E	29	36	Right-handed alpha
Helix 39	AE3	E	56	68	Right-handed alpha
Helix 40	AE4	E	98	104	Right-handed alpha
Helix 41	AE5	E	104	130	Right-handed alpha
Helix 42	AE6	E	146	157	Right-handed alpha
Helix 43	AE7	E	173	181	Right-handed alpha
Helix 44	AE8	E	182	194	Right-handed alpha
Helix 45	AE9	E	206	216	Right-handed alpha
Helix 46	AF1	E	227	239	Right-handed alpha
Helix 47	AF2	E	254	259	Right-handed 310
Helix 48	AF3	E	269	274	Right-handed alpha
Helix 49	AF4	F	9	25	Right-handed alpha
Helix 50	AF5	F	29	36	Right-handed alpha
Helix 51	AF6	F	56	68	Right-handed alpha
Helix 52	AF7	F	98	104	Right-handed alpha
Helix 53	AF8	F	104	130	Right-handed alpha
Helix 54	AF9	F	146	157	Right-handed alpha
Helix 55	AG1	F	173	181	Right-handed alpha
Helix 56	AG2	F	183	194	Right-handed alpha
Helix 57	AG3	F	206	216	Right-handed alpha
Helix 58	AG4	F	227	239	Right-handed alpha
Helix 59	AG5	F	254	259	Right-handed 310
Helix 60	AG6	F	269	274	Right-handed alpha
Helix 61	AG7	H	9	25	Right-handed alpha
Helix 62	AG8	H	29	34	Right-handed alpha
Helix 63	AG9	H	56	68	Right-handed alpha
Helix 64	AH1	H	97	104	Right-handed alpha
Helix 65	AH2	H	104	130	Right-handed alpha
Helix 66	AH3	H	146	157	Right-handed alpha
Helix 67	AH4	H	173	181	Right-handed alpha
Helix 68	AH5	H	183	194	Right-handed alpha
Helix 69	AH6	H	206	216	Right-handed alpha
Helix 70	AH7	H	227	239	Right-handed alpha
Helix 71	AH8	H	254	259	Right-handed 310
Helix 72	AH9	H	269	274	Right-handed alpha

There are 18 sheets in PDB entry 5HUP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	74	first strand
Strand 2	A	89	97	anti-parallel
Strand 3	A	41	48	anti-parallel
Strand 4	A	280	287	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	84	85	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	137	first strand
Strand 2	A	265	267	parallel
Strand 3	A	243	247	parallel
Strand 4	A	220	224	parallel
Strand 5	A	200	204	parallel
Strand 6	A	170	172	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	74	first strand
Strand 2	B	89	97	anti-parallel
Strand 3	B	41	48	anti-parallel
Strand 4	B	280	287	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	53	first strand
Strand 2	B	84	85	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	137	first strand
Strand 2	B	265	267	parallel
Strand 3	B	243	247	parallel
Strand 4	B	220	224	parallel
Strand 5	B	200	204	parallel
Strand 6	B	170	172	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	74	first strand
Strand 2	C	89	96	anti-parallel
Strand 3	C	42	48	anti-parallel
Strand 4	C	280	287	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	84	85	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	137	first strand
Strand 2	C	265	267	parallel
Strand 3	C	243	247	parallel
Strand 4	C	220	224	parallel
Strand 5	C	200	204	parallel
Strand 6	C	170	172	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	72	74	first strand
Strand 2	E	89	97	anti-parallel
Strand 3	E	41	48	anti-parallel
Strand 4	E	280	287	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	53	first strand
Strand 2	E	84	85	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	135	137	first strand
Strand 2	E	265	267	parallel
Strand 3	E	243	247	parallel
Strand 4	E	220	224	parallel
Strand 5	E	200	204	parallel
Strand 6	E	170	172	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	72	74	first strand
Strand 2	F	89	97	anti-parallel
Strand 3	F	41	48	anti-parallel
Strand 4	F	280	287	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	53	first strand
Strand 2	F	84	85	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	135	137	first strand
Strand 2	F	265	267	parallel
Strand 3	F	243	247	parallel
Strand 4	F	220	224	parallel
Strand 5	F	200	204	parallel
Strand 6	F	170	172	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	72	74	first strand
Strand 2	H	89	96	anti-parallel
Strand 3	H	42	48	anti-parallel
Strand 4	H	280	287	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	52	53	first strand
Strand 2	H	84	85	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	135	138	first strand
Strand 2	H	265	268	parallel
Strand 3	H	243	247	parallel
Strand 4	H	220	224	parallel
Strand 5	H	200	204	parallel
Strand 6	H	170	172	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5HUP

Analysis of interatomic Contacts of Structural Units in PDB entry:
5HUP