Analysis of interatomic Contacts of Structural Units in PDB entry:
5HV1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HV1 entry

There is 1 chain in PDB entry 5HV1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 867
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5HV1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 11Right-handed 310
Helix 2
AA2
A
15 30Right-handed alpha
Helix 3
AA3
A
44 52Right-handed alpha
Helix 4
AA4
A
55 66Right-handed alpha
Helix 5
AA5
A
72 90Right-handed alpha
Helix 6
AA6
A
93 106Right-handed alpha
Helix 7
AA7
A
142 156Right-handed alpha
Helix 8
AA8
A
159 169Right-handed alpha
Helix 9
AA9
A
172 174Right-handed 310
Helix 10
AB1
A
216 222Right-handed alpha
Helix 11
AB2
A
262 267Right-handed alpha
Helix 12
AB3
A
272 291Right-handed alpha
Helix 13
AB4
A
333 338Right-handed alpha
Helix 14
AB5
A
344 353Right-handed alpha
Helix 15
AB6
A
370 376Right-handed alpha
Helix 16
AB7
A
382 387Right-handed alpha
Helix 17
AB8
A
391 402Right-handed alpha
Helix 18
AB9
A
435 455Right-handed alpha
Helix 19
AC1
A
459 479Right-handed alpha
Helix 20
AC2
A
480 505Right-handed alpha
Helix 21
AC3
A
510 515Right-handed alpha
Helix 22
AC4
A
521 538Right-handed alpha
Helix 23
AC5
A
540 549Right-handed alpha
Helix 24
AC6
A
554 562Right-handed 310
Helix 25
AC7
A
564 580Right-handed alpha
Helix 26
AC8
A
593 600Right-handed 310
Helix 27
AC9
A
601 611Right-handed alpha
Helix 28
AD1
A
615 639Right-handed alpha
Helix 29
AD2
A
644 663Right-handed alpha
Helix 30
AD3
A
664 666Right-handed 310
Helix 31
AD4
A
667 694Right-handed alpha
Helix 32
AD5
A
701 706Right-handed 310
Helix 33
AD6
A
707 718Right-handed alpha
Helix 34
AD7
A
721 735Right-handed alpha
Helix 35
AD8
A
784 788Right-handed 310
Helix 36
AD9
A
802 809Right-handed 310
Helix 37
AE1
A
826 834Right-handed alpha
Helix 38
AE2
A
843 848Right-handed alpha
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There are 5 sheets in PDB entry 5HV1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 7first strand
Strand 2
A
40 43anti-parallel
Strand 3
A
176 184anti-parallel
Strand 4
A
114 122anti-parallel
Strand 5
A
136 140anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 239first strand
Strand 2
A
227 231anti-parallel
Strand 3
A
207 213anti-parallel
Strand 4
A
190 195anti-parallel
Strand 5
A
294 301anti-parallel
Strand 6
A
304 312anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 250first strand
Strand 2
A
256 260anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 361first strand
Strand 2
A
366 369anti-parallel
Strand 3
A
329 332anti-parallel
Strand 4
A
743 745anti-parallel
Strand 5
A
750 751anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
765 766first strand
Strand 2
A
862 864anti-parallel
Strand 3
A
853 857anti-parallel
Strand 4
A
774 781anti-parallel
Strand 5
A
795 797parallel
Strand 6
A
814 816parallel
Strand 7
A
837 838parallel
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