Analysis of interatomic Contacts of Structural Units in PDB entry:
5HV6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HV6 entry

There are 2 chains in PDB entry 5HV6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2THR 314
B
 GLY -1PRO 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5HV6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 33Right-handed alpha
Helix 2
AA2
A
44 52Right-handed alpha
Helix 3
AA3
A
55 67Right-handed alpha
Helix 4
AA4
A
74 89Right-handed alpha
Helix 5
AA5
A
93 105Right-handed alpha
Helix 6
AA6
A
142 157Right-handed alpha
Helix 7
AA7
A
159 169Right-handed alpha
Helix 8
AA8
A
172 176Right-handed 310
Helix 9
AA9
A
216 221Right-handed alpha
Helix 10
AB1
A
264 268Right-handed 310
Helix 11
AB2
A
272 291Right-handed alpha
Helix 12
AB3
B
19 31Right-handed alpha
Helix 13
AB4
B
44 53Right-handed alpha
Helix 14
AB5
B
57 66Right-handed alpha
Helix 15
AB6
B
77 90Right-handed alpha
Helix 16
AB7
B
95 108Right-handed alpha
Helix 17
AB8
B
142 156Right-handed alpha
Helix 18
AB9
B
159 168Right-handed alpha
Helix 19
AC1
B
172 176Right-handed 310
Helix 20
AC2
B
272 291Right-handed alpha
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There are 6 sheets in PDB entry 5HV6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 43first strand
Strand 2
A
179 184anti-parallel
Strand 3
A
113 119anti-parallel
Strand 4
A
140 141anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 238first strand
Strand 2
A
227 232anti-parallel
Strand 3
A
206 212anti-parallel
Strand 4
A
190 195anti-parallel
Strand 5
A
294 301anti-parallel
Strand 6
A
304 312anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 250first strand
Strand 2
A
256 260anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 43first strand
Strand 2
B
180 184anti-parallel
Strand 3
B
114 116anti-parallel
Strand 4
B
137 140anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
235 236first strand
Strand 2
B
227 232anti-parallel
Strand 3
B
206 213anti-parallel
Strand 4
B
190 195anti-parallel
Strand 5
B
296 301anti-parallel
Strand 6
B
304 310anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 250first strand
Strand 2
B
256 260anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il