Analysis of interatomic Contacts of Structural Units in PDB entry:
5HVF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HVF entry

There are 2 chains in PDB entry 5HVF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2ARG 399
B
 VAL 2SER 119
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5HVF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 27Right-handed alpha
Helix 2
AA2
A
36 40Right-handed 310
Helix 3
AA3
A
54 66Right-handed alpha
Helix 4
AA4
A
75 86Right-handed alpha
Helix 5
AA5
A
95 100Right-handed 310
Helix 6
AA6
A
103 118Right-handed alpha
Helix 7
AA7
A
163 176Right-handed alpha
Helix 8
AA8
A
202 212Right-handed alpha
Helix 9
AA9
A
232 236Right-handed 310
Helix 10
AB1
A
264 277Right-handed alpha
Helix 11
AB2
A
307 326Right-handed alpha
Helix 12
AB3
A
336 340Right-handed alpha
Helix 13
AB4
A
346 353Right-handed alpha
Helix 14
AB5
A
375 377Right-handed 310
Helix 15
AB6
A
378 399Right-handed alpha
Helix 16
AB7
B
72 74Right-handed 310
Helix 17
AB8
B
85 89Right-handed 310
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There are 5 sheets in PDB entry 5HVF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
46 51anti-parallel
Strand 3
A
4 9anti-parallel
Strand 4
A
69 73anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 129first strand
Strand 2
A
135 140anti-parallel
Strand 3
A
195 198anti-parallel
Strand 4
A
152 155parallel
Strand 5
A
283 289parallel
Strand 6
A
358 364parallel
Strand 7
A
293 296anti-parallel
Strand 8
A
332 335parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
76 81anti-parallel
Strand 4
B
66 71anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
113 117parallel
Strand 3
B
90 100anti-parallel
Strand 4
B
33 39anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
56 58anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
113 117parallel
Strand 3
B
90 100anti-parallel
Strand 4
B
104 109anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il