Analysis of interatomic Contacts of Structural Units in PDB entry:
5HVG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5HVG entry

There are 4 chains in PDB entry 5HVG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 1	VAL 401
B	GLN 1	SER 122
C	GLN 2	VAL 401
D	VAL 2	VAL 120

There are 40 helices in PDB entry 5HVG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	27	Right-handed alpha
Helix 2	AA2	A	36	40	Right-handed 310
Helix 3	AA3	A	54	66	Right-handed alpha
Helix 4	AA4	A	75	86	Right-handed alpha
Helix 5	AA5	A	95	100	Right-handed 310
Helix 6	AA6	A	103	118	Right-handed alpha
Helix 7	AA7	A	163	180	Right-handed alpha
Helix 8	AA8	A	183	192	Right-handed alpha
Helix 9	AA9	A	202	212	Right-handed alpha
Helix 10	AB1	A	232	236	Right-handed 310
Helix 11	AB2	A	264	277	Right-handed alpha
Helix 12	AB3	A	307	326	Right-handed alpha
Helix 13	AB4	A	336	340	Right-handed alpha
Helix 14	AB5	A	346	353	Right-handed alpha
Helix 15	AB6	A	375	377	Right-handed 310
Helix 16	AB7	A	378	401	Right-handed alpha
Helix 17	AB8	B	25	30	Right-handed alpha
Helix 18	AB9	B	86	90	Right-handed 310
Helix 19	AC1	B	99	103	Right-handed 310
Helix 20	AC2	B	105	109	Right-handed 310
Helix 21	AC3	C	13	27	Right-handed alpha
Helix 22	AC4	C	36	40	Right-handed 310
Helix 23	AC5	C	54	66	Right-handed alpha
Helix 24	AC6	C	75	86	Right-handed alpha
Helix 25	AC7	C	95	100	Right-handed 310
Helix 26	AC8	C	103	118	Right-handed alpha
Helix 27	AC9	C	163	180	Right-handed alpha
Helix 28	AD1	C	183	192	Right-handed alpha
Helix 29	AD2	C	202	212	Right-handed alpha
Helix 30	AD3	C	232	236	Right-handed 310
Helix 31	AD4	C	264	277	Right-handed alpha
Helix 32	AD5	C	307	326	Right-handed alpha
Helix 33	AD6	C	336	340	Right-handed alpha
Helix 34	AD7	C	346	354	Right-handed alpha
Helix 35	AD8	C	375	377	Right-handed 310
Helix 36	AD9	C	378	401	Right-handed alpha
Helix 37	AE1	D	25	30	Right-handed alpha
Helix 38	AE2	D	86	90	Right-handed 310
Helix 39	AE3	D	99	103	Right-handed 310
Helix 40	AE4	D	105	109	Right-handed 310

There are 8 sheets in PDB entry 5HVG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	33	first strand
Strand 2	A	46	51	anti-parallel
Strand 3	A	4	9	anti-parallel
Strand 4	A	69	73	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	129	first strand
Strand 2	A	135	141	anti-parallel
Strand 3	A	193	198	anti-parallel
Strand 4	A	150	155	parallel
Strand 5	A	281	289	parallel
Strand 6	A	358	364	parallel
Strand 7	A	293	296	anti-parallel
Strand 8	A	332	335	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	7	first strand
Strand 2	B	18	23	anti-parallel
Strand 3	B	77	82	anti-parallel
Strand 4	B	67	72	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	116	120	parallel
Strand 3	B	91	97	anti-parallel
Strand 4	B	34	39	anti-parallel
Strand 5	B	45	51	anti-parallel
Strand 6	B	57	59	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	33	first strand
Strand 2	C	46	51	anti-parallel
Strand 3	C	4	9	anti-parallel
Strand 4	C	69	73	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	129	first strand
Strand 2	C	135	141	anti-parallel
Strand 3	C	193	198	anti-parallel
Strand 4	C	150	155	parallel
Strand 5	C	281	288	parallel
Strand 6	C	358	363	parallel
Strand 7	C	293	296	anti-parallel
Strand 8	C	332	335	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	18	24	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	68	72	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	11	first strand
Strand 2	D	116	119	parallel
Strand 3	D	91	97	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	57	59	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5HVG

Analysis of interatomic Contacts of Structural Units in PDB entry:
5HVG