Analysis of interatomic Contacts of Structural Units in PDB entry:
5HVJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HVJ entry

There are 2 chains in PDB entry 5HVJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 329ARG 633
B
 PRO 330SER 637
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5HVJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
335 337Right-handed 310
Helix 2
AA2
A
374 389Right-handed alpha
Helix 3
AA3
A
420 427Right-handed alpha
Helix 4
AA4
A
433 454Right-handed alpha
Helix 5
AA5
A
512 516Right-handed 310
Helix 6
AA6
A
517 522Right-handed alpha
Helix 7
AA7
A
528 545Right-handed alpha
Helix 8
AA8
A
562 570Right-handed alpha
Helix 9
AA9
A
578 587Right-handed alpha
Helix 10
AB1
A
596 614Right-handed alpha
Helix 11
AB2
A
618 632Right-handed alpha
Helix 12
AB3
B
374 389Right-handed alpha
Helix 13
AB4
B
420 427Right-handed alpha
Helix 14
AB5
B
433 454Right-handed alpha
Helix 15
AB6
B
517 522Right-handed alpha
Helix 16
AB7
B
529 545Right-handed alpha
Helix 17
AB8
B
562 570Right-handed alpha
Helix 18
AB9
B
578 587Right-handed alpha
Helix 19
AC1
B
596 612Right-handed alpha
Helix 20
AC2
B
618 633Right-handed alpha
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There are 5 sheets in PDB entry 5HVJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 334first strand
Strand 2
A
399 403parallel
Strand 3
A
410 414anti-parallel
Strand 4
A
364 369anti-parallel
Strand 5
A
352 358anti-parallel
Strand 6
A
339 347anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 457first strand
Strand 2
A
483 484anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 468first strand
Strand 2
A
474 476anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 344first strand
Strand 2
B
352 358anti-parallel
Strand 3
B
364 369anti-parallel
Strand 4
B
410 414anti-parallel
Strand 5
B
399 401anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
466 468first strand
Strand 2
B
474 476anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il