Analysis of interatomic Contacts of Structural Units in PDB entry:
5HVK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5HVK entry

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 7 chains in PDB entry 5HVK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 324	TYR 507
A	VAL 509	ARG 634
B	ALA 2	ALA 2
B	GLY 4	LEU 166
C	SER 328	TYR 507
C	VAL 509	ARG 633
D	ALA 2	PRO 165

There are 33 helices in PDB entry 5HVK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	377	389	Right-handed alpha
Helix 2	AA2	A	420	427	Right-handed alpha
Helix 3	AA3	A	433	454	Right-handed alpha
Helix 4	AA4	A	517	522	Right-handed alpha
Helix 5	AA5	A	528	545	Right-handed alpha
Helix 6	AA6	A	562	570	Right-handed alpha
Helix 7	AA7	A	578	587	Right-handed alpha
Helix 8	AA8	A	590	594	Right-handed 310
Helix 9	AA9	A	596	613	Right-handed alpha
Helix 10	AB1	A	618	631	Right-handed alpha
Helix 11	AB2	B	8	19	Right-handed alpha
Helix 12	AB3	B	24	32	Right-handed alpha
Helix 13	AB4	B	66	75	Right-handed alpha
Helix 14	AB5	B	110	128	Right-handed alpha
Helix 15	AB6	B	139	144	Right-handed alpha
Helix 16	AB7	B	146	154	Right-handed alpha
Helix 17	AB8	C	374	389	Right-handed alpha
Helix 18	AB9	C	420	427	Right-handed alpha
Helix 19	AC1	C	433	454	Right-handed alpha
Helix 20	AC2	C	517	522	Right-handed alpha
Helix 21	AC3	C	528	545	Right-handed alpha
Helix 22	AC4	C	562	570	Right-handed alpha
Helix 23	AC5	C	578	587	Right-handed alpha
Helix 24	AC6	C	590	594	Right-handed 310
Helix 25	AC7	C	596	613	Right-handed alpha
Helix 26	AC8	C	618	632	Right-handed alpha
Helix 27	AC9	D	8	19	Right-handed alpha
Helix 28	AD1	D	25	31	Right-handed alpha
Helix 29	AD2	D	58	60	Right-handed 310
Helix 30	AD3	D	66	75	Right-handed alpha
Helix 31	AD4	D	110	126	Right-handed alpha
Helix 32	AD5	D	139	144	Right-handed alpha
Helix 33	AD6	D	146	154	Right-handed alpha

There are 10 sheets in PDB entry 5HVK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	334	first strand
Strand 2	A	399	403	parallel
Strand 3	A	410	414	anti-parallel
Strand 4	A	364	370	anti-parallel
Strand 5	A	351	358	anti-parallel
Strand 6	A	339	344	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	457	first strand
Strand 2	A	483	484	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	468	first strand
Strand 2	A	474	476	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	7	first strand
Strand 2	B	46	56	parallel
Strand 3	B	33	40	anti-parallel
Strand 4	B	81	90	anti-parallel
Strand 5	B	96	104	anti-parallel
Strand 6	B	134	137	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	7	first strand
Strand 2	B	46	56	parallel
Strand 3	B	33	40	anti-parallel
Strand 4	B	81	90	anti-parallel
Strand 5	B	160	161	anti-parallel
Strand 6	B	164	165	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	332	334	first strand
Strand 2	C	399	403	parallel
Strand 3	C	410	414	anti-parallel
Strand 4	C	364	370	anti-parallel
Strand 5	C	351	358	anti-parallel
Strand 6	C	339	344	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	456	457	first strand
Strand 2	C	483	484	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	466	468	first strand
Strand 2	C	474	476	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	7	first strand
Strand 2	D	46	56	parallel
Strand 3	D	33	40	anti-parallel
Strand 4	D	81	91	anti-parallel
Strand 5	D	94	104	anti-parallel
Strand 6	D	134	137	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	7	first strand
Strand 2	D	46	56	parallel
Strand 3	D	33	40	anti-parallel
Strand 4	D	81	91	anti-parallel
Strand 5	D	160	161	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5HVK

Analysis of interatomic Contacts of Structural Units in PDB entry:
5HVK