Analysis of interatomic Contacts of Structural Units in PDB entry:
5HVL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HVL entry

There are 2 chains in PDB entry 5HVL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4CYS 470
B
 GLY 4LYS 469
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 5HVL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 38Right-handed alpha
Helix 2
AA2
A
38 43Right-handed alpha
Helix 3
AA3
A
58 60Right-handed 310
Helix 4
AA4
A
61 74Right-handed alpha
Helix 5
AA5
A
81 90Right-handed alpha
Helix 6
AA6
A
96 102Right-handed alpha
Helix 7
AA7
A
104 108Right-handed 310
Helix 8
AA8
A
111 131Right-handed alpha
Helix 9
AA9
A
144 147Right-handed 310
Helix 10
AB1
A
148 158Right-handed alpha
Helix 11
AB2
A
176 181Right-handed alpha
Helix 12
AB3
A
185 194Right-handed alpha
Helix 13
AB4
A
203 218Right-handed alpha
Helix 14
AB5
A
245 253Right-handed alpha
Helix 15
AB6
A
255 269Right-handed alpha
Helix 16
AB7
A
282 285Right-handed 310
Helix 17
AB8
A
286 301Right-handed alpha
Helix 18
AB9
A
302 305Right-handed 310
Helix 19
AC1
A
321 343Right-handed alpha
Helix 20
AC2
A
358 369Right-handed alpha
Helix 21
AC3
A
383 391Right-handed alpha
Helix 22
AC4
A
405 410Right-handed 310
Helix 23
AC5
A
421 435Right-handed alpha
Helix 24
AC6
A
436 454Right-handed alpha
Helix 25
AC7
A
455 470Right-handed alpha
Helix 26
AC8
B
32 38Right-handed alpha
Helix 27
AC9
B
38 44Right-handed alpha
Helix 28
AD1
B
58 60Right-handed 310
Helix 29
AD2
B
61 74Right-handed alpha
Helix 30
AD3
B
81 90Right-handed alpha
Helix 31
AD4
B
96 102Right-handed alpha
Helix 32
AD5
B
104 108Right-handed 310
Helix 33
AD6
B
111 133Right-handed alpha
Helix 34
AD7
B
144 147Right-handed 310
Helix 35
AD8
B
148 158Right-handed alpha
Helix 36
AD9
B
176 181Right-handed alpha
Helix 37
AE1
B
185 194Right-handed alpha
Helix 38
AE2
B
203 218Right-handed alpha
Helix 39
AE3
B
245 253Right-handed alpha
Helix 40
AE4
B
255 269Right-handed alpha
Helix 41
AE5
B
282 285Right-handed 310
Helix 42
AE6
B
286 301Right-handed alpha
Helix 43
AE7
B
302 305Right-handed 310
Helix 44
AE8
B
321 343Right-handed alpha
Helix 45
AE9
B
358 369Right-handed alpha
Helix 46
AF1
B
383 391Right-handed alpha
Helix 47
AF2
B
405 410Right-handed 310
Helix 48
AF3
B
421 435Right-handed alpha
Helix 49
AF4
B
436 454Right-handed alpha
Helix 50
AF5
B
455 469Right-handed alpha
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There are 6 sheets in PDB entry 5HVL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
47 52parallel
Strand 3
A
6 12parallel
Strand 4
A
138 142parallel
Strand 5
A
165 169parallel
Strand 6
A
198 201parallel
Strand 7
A
233 239parallel
Strand 8
A
227 230anti-parallel
Strand 9
A
221 224anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 19first strand
Strand 2
A
25 29anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 353first strand
Strand 2
A
308 315parallel
Strand 3
A
273 280parallel
Strand 4
A
371 374parallel
Strand 5
A
398 402parallel
Strand 6
A
415 417parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 77first strand
Strand 2
B
47 52parallel
Strand 3
B
6 12parallel
Strand 4
B
138 142parallel
Strand 5
B
165 169parallel
Strand 6
B
198 201parallel
Strand 7
B
233 239parallel
Strand 8
B
227 230anti-parallel
Strand 9
B
221 224anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 19first strand
Strand 2
B
25 29anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
350 353first strand
Strand 2
B
308 315parallel
Strand 3
B
273 280parallel
Strand 4
B
371 374parallel
Strand 5
B
398 402parallel
Strand 6
B
415 417parallel
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